Miscanthus floridulus: 136549517
Help
Entry
136549517 CDS
T10264
Name
(RefSeq) rRNA biogenesis protein RRP5-like isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mflo03009
]
136549517
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
90S particles
Other 90S particles
136549517
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_PDCD11
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
PRP6_TPR
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
136549517
NCBI-ProteinID:
XP_066396917
LinkDB
All DBs
Position
4:21055945..21074963
Genome browser
AA seq
1913 aa
AA seq
DB search
MAPPRGDRKMGKGAGGKTDLRPDRKQFKRHSKEDAAAEQGDGEGEQQQSAAPGSAALLAA
ASDEADFPRGGRSLLSKDEMAEARAEAEQDFEREGKKGKGKRKRRGGDSSGFGADDDLGT
LFGGATTGKLPRFANRITVKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDI
ALQENRKDSENSLCAEVVHVGQLVPCIVLRVDDDKKEGKVNRRVWLSLRLSLLYRGLSLD
GLQEGMVLTAQVKSTEDHGYILHFGVSSFSGFMQKDDKENVKIERRQLMQCVVKAIDKTR
AIVHLSSDKDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFSGTVDI
FNLLNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIY
DKSKVLRVDKKAGLFLEIPSPTPSPGFISIHDVSDKDAKNLEKFKEGSSLRVRILGVRNL
EGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSE
LEHIVKPSKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADAKIGLVTHGW
ITKIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNV
SFVISHNRVIPIDTPKLGSIVSGVVERLTPAAIVVSVNGISKGTILNEHLADHHGQASQL
KNLLKPGHEFNQLLVLDIEGQNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIE
AGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSINAETARVKLALQQSM
CSSTDSSFIQGYFLLDQKIAALKYSSNDWAHTFGIGSLVEGEVGAIEEYGIILNFKDHPD
VVGLIEHHQLGGSSVEVGSSVKGLVFDLSDGVVNLSLKPELIGSVRNVGKKKKRQRAAVA
DLELHEEVNAVVEIIKESYVVLSIPEYNYAIGFAPLMDYNSQLLPHHHYDNGQRITVVVG
NIPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYKIGSLVEAEIIDIKPLELLLQFGG
NLHGRIHITEVLEEDSDEHPFSKLRIGQKLNARIVAEAEPSGKSGKNFKWELSIRPCIVK
GEFEELTAQKEQKHTTNEIVRAYVVKVDKEWVWLTVSRNVMAHLFVLDSSSEPSELKEFQ
QRFSVGQAVKGRVINVNREKRLLRLKALDNQCTQPNIDEIQQSKFSVFEQTKQGDIIGGR
VQKILPGVGGLVVQIGPHLHGRVHYTEIVDSWVAEPLSGFHEGQFVKCKVLSVSRSSEGS
LRVDLSLRSSNLIRDSNNSGLVDDLATCTSRIEKIKDLLPGTEIKGYVKNVNSKGCFIML
SRMVEARITLSNLSDEYVENPQKDFPVGMLVHGRVLSTDPSSGRVEASLRKTTGSKLEKL
DDISYSDLHVGDIIDGQVKRVESFGLFVTIRRSELVGLCHVSELSDEPVVDINSCYKAGD
MVKAKILKIDEKRHRVSLGTKKSYFDSGLTADTNDDEDDESALMDISVAPQMVEYHNRSL
VHRKAEPMASVLPLQVCLDESEGSDLEDNNNNNNKGLEIANGTEANAKKNDKQLKKEARK
QRELEISAMEERALQGDVPQTPDDFEKLVRSSPNSSFVWIKYMATLLDLADVEKARAVAE
RALKTIIPREEEEKLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMY
ERTEQYELADELLDRMTKRFKTSCKIWLCRIQFALKQGKDVEYIKSIVNRVLLSLPHRKR
IKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDREVIRALFER
VTCLTLPPKKMQFLFKKYLNFEKSLGQDNERIQLVQQKAIEYVQSSLPSQDNS
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgcgcggcgacaggaagatgggaaagggcgccggtggcaagaccgacctg
cgccccgaccggaagcagttcaaaaggcacagcaaggaggatgcagctgctgagcagggg
gatggcgaaggagagcagcagcagtcggcagcgccgggttctgctgcgctcctcgccgca
gcttctgacgaagctgacttcccgagagggggacgcagcctcctgagcaaggatgagatg
gcggaggctcgtgcggaggcggagcaggatttcgagagggaggggaagaaggggaagggg
aaaaggaagaggaggggcggcgactcgtctggttttggcgcggatgacgacttggggaca
ctcttcggcggggccaccactgggaagctcccacgctttgctaatcgcatcacagtaaag
aatatttcaccaaatatgaagctctggggtgttgtaattgaggttaaccagaaagatatc
gtgttaagtctacctggtggaattagagggtttgttcgctcagaggatgtgtgcgacatt
gctttgcaggaaaatcgtaaggatagtgagaacagtttatgtgcagaagttgttcatgtt
ggtcagcttgttccttgtatagtcctacgagttgacgatgataagaaagaaggaaaagta
aacagacgggtttggctatcattgcgattaagcctactgtacaggggactttccctggat
ggcttgcaggaaggaatggtacttactgcccaagtcaaaagcactgaggaccatggttac
attcttcattttggagtatcctcctttagcggatttatgcaaaaggatgacaaagaaaat
gtgaagattgagcgccgacaactgatgcaatgtgttgtgaaggcgattgacaaaactcgg
gctattgttcacttgagttctgataaagacttgctttctaaatctattattaaggatctg
aaaggcctttctattgatcatttgattcctgggatgatggttaatgcacgcgtccattca
gttcttgaaaatggagtcatgttatcatttcttacttatttcagtggaacagttgatatt
tttaatttgttgaattcctttccctctggtaattggaaagatgattacagtaagaataag
aaggtaaatgctcgcatcctgttcgttgatccatcaacaagagcagttgggcttacattg
aacaaacatttacttcatcttgaagtaccccctattaatctaaaagctggagatatctac
gataaatcaaaggtgctgagggtagataaaaaggctggcctttttcttgaaataccttct
ccaactccatcacctggatttattagtatacatgatgtgtcagacaaggatgcaaaaaac
ttggagaagtttaaggaaggcagtagcttacgtgtccgtatacttggagtgcggaatctt
gaaggagttgcaataggcaccgtaaaagacagtgcttttgaagggtctgttttcactcat
gatgatgttaaacctggaatgttagtgagagctaaggttgctactgttgagccattcggt
gctattgtacagttttcaagtggtgtgaaagcactttgcccgcttcctcacatgtcagag
ttggaacatattgtgaaaccatcaaagaaatttaaggttggagctgagcttcttttccgt
gtattgggctgcaaatccaagagagttacagtgacatacaagaagtctctggtgaaatca
aaacttgatgtgctggcatcatatgctgatgcaaaaattggtttagtgactcatggatgg
attactaaaattgaaaagcacggttgctttgtaaaattctacaatggagttcagggtttt
gttagcagatctgaccttggattagaggctggaactgaagcagaaaatgtttatcatgtt
ggtcaagtggtcaaatgtagaattatcaatgtgatccctgcttcaagaaaactaaatgtt
agttttgtcatatcccataatagggttattccaatagacactccaaagttgggtagtatt
gtctctggtgttgtggaacggcttactcctgcagctattgttgtcagtgtaaatggcatc
tccaaggggacaatactaaatgaacatttggcagaccatcatggtcaagcttctcagttg
aagaatttgctgaagcctgggcacgagttcaaccaacttctagttctcgatattgaaggt
caaaatttagttctttcggcaaagcactcacttatcaattgcgcaaatgacattccttca
gagatatcgcagatgcatcctggagttgtagttcatggttacatctgcaacattatcgaa
gctggttgttttgtccgttttctcggacatttgactggtttctctcccaaggacaaagca
gttgataggcggatagaaaggctttctgatgcattctatgttggccagtcagttcggagt
catatactcagcataaatgcagaaactgctagagtaaaactcgcacttcaacagtcaatg
tgctcctcaacagattcttcatttattcaaggatactttcttctggatcagaagattgca
gcattgaagtactcaagcaatgattgggctcacacttttggcattggtagcttagttgag
ggggaggtgggagcaatagaagaatatggcattatccttaacttcaaagaccatccggat
gttgttggcttaatcgagcaccatcaacttggtggcagtagtgtggaagtgggatcttct
gtgaagggtcttgttttcgatttatctgatggagttgttaacttgtcccttaaaccagag
ctaattggcagtgttagaaatgttggaaaaaagaagaaacgccaaagggctgcagttgca
gacttggagcttcatgaggaagtgaatgcagttgtggaaataatcaaagagagctatgtg
gtcctttccatccctgagtacaattacgcaattggttttgcaccactgatggattacaac
tcacaactgcttccccaccaccactatgataatggacaacgcattactgtggttgttgga
aatatcccaagttctgattcttctggaagacttatcctactaccaaaagcttcggctcag
tattctgccctctctgaatctaaaagggctaagaagaaatctggctacaaaattgggtca
cttgttgaagcagagattattgatatcaagccgcttgaacttctactgcaatttggtggc
aatcttcatggaagaatccatattactgaggttcttgaagaggattctgatgagcatccc
tttagtaaactcagaatagggcaaaagcttaatgccagaattgttgcagaggctgaacct
tctggaaagagtggcaaaaacttcaaatgggaattgtctattaggccatgtatagtcaag
ggagagtttgaagaattaactgctcaaaaagaacaaaagcacaccacaaatgagattgta
cgtgcttatgtcgtcaaggtggataaggaatgggtctggttaactgtatcaagaaatgtt
atggctcatttatttgtacttgatagttcttctgagcccagcgaactgaaagaattccag
cagcgctttagtgtaggccaagcagtgaagggccgtgttatcaatgtgaaccgggagaaa
aggttacttcggttgaaggcacttgataaccaatgcacacagccgaatatagatgaaata
caacaatcaaagttctctgtgtttgaacaaacaaaacaaggagatatcatcggtggacgt
gttcaaaaaattctacctggtgttggtgggcttgtcgttcagattggacctcatctccat
gggagggttcattatactgaaattgttgactcatgggtggccgaacccttgtctggattc
catgagggccagtttgtgaagtgcaaggtcctgtctgtgagccgctcatcagaaggatca
cttcgagttgatctttcactccgttcatcaaatctgatcagagactctaacaactcagga
ctagttgatgatctggcaacctgtacctcccggatcgaaaagatcaaggatctgcttccc
ggaactgagattaagggctatgtgaagaatgttaattccaaaggatgttttattatgctt
tctcgaatggttgaggctaggattactctatcaaatttgtcagatgagtatgttgaaaat
ccgcagaaggatttccctgttggaatgcttgtacatggaagggtcctgtctacggaccca
tcatcagggagagttgaggcatcacttaggaagaccactggttccaaattggaaaagctg
gatgatattagttatagtgatttgcatgttggggatatcattgatggccaagttaagcgg
gttgaatcctttggattattcgttacaattcggagaagtgaactggttggtctgtgccat
gtatcagaactttctgatgaacctgtcgttgatattaactcttgctataaagctggtgat
atggttaaagccaaaattctgaagatcgatgagaagcggcatcgagtatcacttggaacg
aagaagtcgtactttgattctggtctgactgctgacacaaatgatgatgaagatgatgaa
agtgctcttatggacatcagtgttgcccctcagatggttgaatatcataacagaagttta
gttcatcgcaaagcagaaccaatggcttctgtgctgcctcttcaggtttgcttggatgaa
tctgaaggttctgacctagaggataataataataataataataaaggtcttgaaattgca
aatggaactgaagcaaatgctaaaaagaatgataaacaattaaagaaggaagcaagaaaa
caaagggaactagaaatcagtgctatggaggaaagggctttgcagggagatgtaccacaa
actccagatgattttgagaagttggtcaggagctccccaaatagtagttttgtctggata
aaatatatggccactttgttagatcttgcagatgttgagaaagcacgtgcagtagctgag
agggctttaaaaacaataatccccagagaagaagaggagaaacttaatgtttgggtagca
tatttcaatctggaaaatgaatacggtagtccacgggaggatgctgtgaaaaaggtattc
caaagagccttgcaatattgtgatcccaaaaagttgcacttggctcttcttgcgatgtac
gagaggaccgaacagtatgaacttgcagatgaacttctagacagaatgaccaaaaggttc
aaaacttcctgcaagatatggttatgccgcattcagttcgccctcaagcaaggcaaggat
gttgagtacatcaaatccattgtaaaccgtgtgcttctaagtttgccacataggaagcgc
ataaagttcctctcgcagacagctattctagaattcaaatgtggggtgcctgaagaagga
agatccagatttgaactaatattgcgggagtacccaaaaagaacagacctttggagtgtt
tatcttgaccaagaaatccgccttggtgacagagaagttatacgggcattgtttgagagg
gtgacttgtcttaccctacctccaaaaaagatgcagttcttgttcaagaagtaccttaat
ttcgagaagtcactgggtcaagacaacgaaagaattcagcttgtgcagcagaaggcaatt
gaatatgttcagagttcactgccgtcacaagacaactcttga
DBGET
integrated database retrieval system
