Miscanthus floridulus: 136549706
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Entry
136549706 CDS
T10264
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136549706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136549706
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
136549706
mRNA cycle factors
Common to processing body (P body) and stress granule
136549706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
136549706
NCBI-ProteinID:
XP_066397178
LinkDB
All DBs
Position
4:53859016..53881460
Genome browser
AA seq
1040 aa
AA seq
DB search
MMTVPMDSASVAPSSVRDLAERLLTRNNELEDQLRKSAQSKVPSDPNIWLQMRDNFEKII
LLDHDLSEQKEVEYLLWQLHYKRIEDFRRNISAASSVASSGKSNANPDRVKRIKSAFKSF
LSEATGFYHDLMFKIKSNWGLPLSYFPEGLDNANNSVRDDKKTVQLKKGLISCHRCLIYL
GDLARYKSLHGDGDSASREYAAASSYYKEAASIYPSSGNPHHQLAILASYSGNEVVAVYR
YFRSLAADTPFTTARDNLIILFEKNRQIYGQLPDNNKFPSAKTLPPRSSGRGRGRGEVRF
QPKDVNAETAERERECNIHDTLKAFYIRFVRLNGILFTRTSLETFGELFSSVSNDLQILL
SSGLEDELNFGCDAAENALAAVRLTVILIFTVHNVKKESDSQSYAEIVQRRVLLQSAFTA
AFDFVGRILRRCSELRDIASSFYLPAILVYIEWLASHPELAVDSEMEEKHANARSFFWNQ
CISFMNKLILTNLASMEDDDDEACFSNMSIYEEGETGNRLALWEDLELRGFLPLVPAHTI
LDFSSKHRFGSVGSTKEKKARVQRIFAAGKSLLNFVQIDQLRIYFDPSSRKFVMAKNPPV
SKVNIPLHDSPDALKTNGADMDHEAARRFDSVSSNMGTLQSNVHFGPDGDDDEEIVFKPT
ASEKFPKAPSDLLVNGYTYPVPMSAAGWPTNASLVSVQSTASMSATGWLPNGGSHSFLAA
GNYNINQSLPRSSVGWAVNGEQNVIPSIAPRFELMQPVEEPASSWTSSGAQHVGPQHTGL
TFQDVISEPRVSASMVQRFSSPDYSKFLSEQEMLLMNGLKTVNITENGYLEQRLQAGLSG
VQSIEYSSTELAGTTKNSMHNHVNITGETVPSTLDSVVPSIAPSGGMPMKFTEAPLTASK
KNPVSRPSKPVGPPPGFNHVTPKRQDDSILVEKLQSPQVDDYSWLDGYQPSIDHVNNLRA
VYPGVSDTSTAFSTPFPFPGKQQVSGIHAQGANEKTWHDFHLFEPSKQNMFQNYHQRNQQ
SGRIAEQEPANSIWSSSYHV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttcccatggatagtgctagcgtagccccatcctccgtgcgggaccttgcc
gagcgtctccttactaggaataatgaactcgaagatcagctccgcaagtccgcacaatcc
aaagtcccatcggatcccaacatatggcttcagatgcgtgacaactttgagaagataatt
ctcttagatcatgacctctctgaacagaaagaggtagaatatctcctgtggcagttgcac
tacaaaagaattgaggacttcaggaggaacattagtgctgcaagctctgttgcatctagt
gggaagagcaacgctaacccagatcgagtcaagagaattaaatcagccttcaaaagcttc
ctttcagaagcaactggcttctatcacgacttgatgttcaagatcaaatcaaattggggc
cttccactcagttactttccagagggccttgacaatgcaaacaactctgtgcgagatgac
aagaaaacagttcagttgaagaaaggtttgatttcatgccatcgctgtctgatatatttg
ggagatcttgctcgttacaagagcttgcatggtgatggtgattctgctagtcgtgaatat
gcagctgcttctagttactacaaagaggcagcttctatctacccttccagtggcaaccct
catcatcagcttgctatactagcttcttactcaggcaacgaggtggtagctgtttatagg
tacttccgaagcttagctgcagatactccttttaccactgcacgggacaacttgattatt
ctttttgaaaagaatcgccaaatctatggacagctgccagacaacaacaaatttcccagt
gctaaaacattacccccacggtcatctgggaggggccgaggacggggagaagtaaggttt
cagccaaaagatgttaatgctgaaacagctgaaagggaacgggagtgcaatattcatgat
acattgaaggccttctatatacgatttgtcaggctcaatggaattcttttcacgaggacc
agtttggaaacatttggggagctgttttcttcagttagcaatgatttgcagattctcctt
tcttctggtcttgaggacgagcttaatttcggttgtgatgctgcagaaaatgcattagct
gctgttaggcttactgtcatccttatattcacagtacacaatgtaaagaaggaatctgat
agccagtcgtatgctgaaattgtgcaacgcagagtactgctccaaagtgcgtttacggct
gcttttgattttgttggacgaattctcagaaggtgttcagagctccgtgatatcgcatca
agcttctatctgccagccattctggtgtacattgaatggctggcgtcccatccagagttg
gctgttgattcagagatggaggaaaagcatgcaaatgccagatcattcttctggaaccaa
tgtatctcatttatgaataagctgatccttaccaaccttgcatctatggaggatgatgat
gatgaggcttgcttttctaatatgagcatttatgaggaaggtgaaactggcaacaggctt
gccctttgggaagatcttgaattgagaggttttttgcccttagttcctgcacataccatt
ttggatttttcaagcaaacacagatttggaagtgttggaagcaccaaggagaagaaagca
cgggttcaacgaatttttgccgcagggaagtcactgctgaactttgttcagatcgatcag
ttgaggatatattttgatccatcttccaggaaatttgtcatggccaagaaccctcctgtt
tctaaagttaacatacctcttcatgattctcctgatgcacttaaaacaaatggcgctgac
atggatcatgaggctgctagaagatttgactcagtttcctcaaacatgggcacactgcag
tctaatgtgcactttggtcctgatggtgatgatgatgaagaaattgttttcaagcctaca
gcttctgaaaagtttccgaaagctccttcagacctgttggttaatggatacacctatcct
gtaccaatgtctgctgctggctggccaaccaatgctagtttagtgtctgttcagagcact
gcatcaatgtctgcgactggttggctacccaatggtgggtcacattcttttctagctgct
ggtaattataacattaaccagtcgcttcccaggtcttctgttggttgggctgtcaatggt
gagcaaaatgttattcctagcattgctccaagatttgagctcatgcagcctgttgaggag
cctgcttccagctggacaagcagtggtgcacagcatgttggtcctcagcacacaggttta
actttccaagatgttatctctgaaccacgtgtatctgcatcaatggttcaacgttttagt
agtcctgactattcgaaatttctcagtgaacaagaaatgctgttaatgaatggactgaag
actgtcaacataactgaaaatggctatctagagcagagattgcaggctggattgagtggt
gtacagtctattgagtattcgtctactgaacttgctggtaccactaaaaactcgatgcat
aatcatgtgaacattactggagagactgtcccctctacacttgattcagttgtaccttca
attgcaccatcaggtggcatgccaatgaaattcacagaagcaccactaactgcttcaaag
aagaaccctgttagtcgtccatcaaagcctgttgggccacctccaggatttaatcatgta
accccgaagcgtcaagatgattctattctggttgaaaaactgcagagcccacaagtcgat
gattacagctggctagatggctatcagccatcgattgatcatgttaacaatttaagagct
gtttatcctggtgtcagtgatactagcacagcattttccactccattccccttccctggg
aaacaacaggtctctgggatacatgcacaaggggccaatgagaagacatggcacgatttc
cacctttttgagccttcaaaacagaatatgttccaaaattaccaccaaagaaatcagcaa
agtggtcgaatagctgaacaagagccagcaaattctatctggtctagcagttaccatgtg
tga
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