Miscanthus floridulus: 136549715
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Entry
136549715 CDS
T10264
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136549715
09123 Folding, sorting and degradation
03018 RNA degradation
136549715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136549715
03041 Spliceosome [BR:
mflo03041
]
136549715
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136549715
mRNA cycle factors
Stress granule specific factors
136549715
Spliceosome [BR:
mflo03041
]
Complex C
Other components
Complex C specific factors
136549715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_RdRP1_2
RRM_7
BRAP2
DUF7918
Motif
Other DBs
NCBI-GeneID:
136549715
NCBI-ProteinID:
XP_066397197
LinkDB
All DBs
Position
4:complement(56386233..56391584)
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AA seq
657 aa
AA seq
DB search
MSAQGQAAAGSASESGGSPAASAAAAAAAAAFPATSLYVGDLHESVQDAQLFDVFSQVGG
VVSVRVCRDINSRKSLGYAYVNYNNPGDAARALELLNFTPINGKPIRIMYSNRDPSSRKR
GAGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFERDESAQSAI
DKLNGMLINDKKVYVGPFVRKQDRENVSSNFKFSNVYVKNLSDTVTDDELKEMFGKYGTI
TSAVVMRDSDGKSRCFGFVNFENADDAAQAVQELNGKIFNDKELYVGRAQKKSEREMELK
EKFEKNIQEVAEKFQNTNLYLKNLEDNIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSG
FVGFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPSVGP
RMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGGPMPNFMMPMVQQGQ
QPQRPAGRRAGAGGMQQPMPMGGQQQMFPRGGRGYRYPTGRGMPDPGMHSVGAVMPSPYE
MGGVPMRDAGLSHPVPVGALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLL
EMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNASPEQQLANLSLNDGVVSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcaagggcaggcggcggctggatccgcgtccgagtccggcggctcaccggct
gcctcagctgcggcggccgcggcggcggccgcgttcccggcgacttcgctctacgtgggt
gacctgcacgagagcgtgcaggacgcgcagctcttcgacgtcttcagccaggtcggcggc
gtcgtctccgtgcgcgtctgcagagacatcaactcccgcaagtcgctcgggtacgcctac
gtcaactacaacaatcccggcgacgctgcacgggcacttgaactgcttaacttcactcct
atcaatggaaagcctatcaggatcatgtattctaaccgtgaccccagttcgcgcaaaagg
ggtgcaggaaatatatttattaagaatcttgataagtcaatagacaacaaagctttatat
gacacgttctgtgcatttgggaatatcctttcatgtaaaattgcaacagacccctcagga
gaatcaaggggctacggtttcgttcagtttgagagggatgaatctgctcagtctgctatt
gataaactcaatgggatgcttatcaatgacaagaaagtgtatgttggaccttttgttcgc
aagcaggacagggaaaatgtttcgagcaatttcaaattcagtaatgtatatgtgaagaat
ctgtcagatactgttactgatgatgagttgaaggagatgtttggaaaatatgggaccatc
actagtgctgttgttatgcgggatagtgatgggaaatccaggtgttttggatttgtcaat
tttgaaaatgcagatgatgctgctcaggctgttcaagagttgaatggcaagatattcaat
gataaggaactgtatgttggaagagcacagaagaagtctgaaagagagatggagttgaag
gagaaattcgaaaagaatattcaagaggtagctgagaagttccaaaacactaacttgtat
ctgaagaacttagaagataacattgatgatgagaagttgcgtgaactctttgctgagtat
ggcaatattacttcttgcaaggttatgcgggattcgaatggtgtcagcagaggatctgga
tttgttggtttcaaatccgctgaagatgctaaccgagctcttacggagatgaatggcaaa
atggttggaagcaagcccctttatgtagctcttgcgcagcgtaaagaagacagaaaggca
aagctacaggcacagttttctcaaatgcgtcctgttgcgatggcgccttcagttggtcct
cgcatgcccatgtttccacctggtgttcctggagttggtcaacagctgttttatggtcag
ccacctccagccttcataaaccctcaggctggatttgccttccagcaacctctgatgcct
ggtatgaggcctggtggtccaatgccgaactttatgatgcctatggttcagcagggacag
caaccacagcgtcctgctggtaggcgtgcaggtgctggtggaatgcagcagcccatgcca
atgggtggtcagcaacagatgttccctagaggtggacgtgggtaccgctatcctactggc
cgcggaatgcctgatcctggcatgcatagtgttggtgctgtgatgccatctccatatgag
atgggaggggtgccaatgagagatgctggtctctcacaccctgttccagtcggggcacta
gccactgcgcttgctaacgccccaccagatcagcagagactgatgcttggtgagaacctg
tatcctcttgtagaacagctggagcgtgagcaggctgctaaggtcaccggcatgcttttg
gagatggaccagacggaggttcttcacctgctggagtcgccagatgctctcaaggccaag
gttgctgaagctatggaggtcctccgctctgcccagcatctccagcagagcaatgcctcc
cccgagcagcagctggctaatctatcactgaatgatggcgttgtctccagctga
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