Miscanthus floridulus: 136549826
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Entry
136549826 CDS
T10264
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
mflo Miscanthus floridulus
Pathway
mflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136549826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136549826
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136549826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
AAA_22
Tudor_KDM3B
LBR_tudor
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
136549826
NCBI-ProteinID:
XP_066397344
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Position
4:75701532..75716625
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AA seq
1302 aa
AA seq
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MASRRASNGRSPLVRKQSQITAFFSSPTPSPPPSGPSPGASKPSPSPLNPSARTRSPLAA
VSPSPPKPQQPQQEQKKGKKDKEERDAVAAVPAPLAAEVVGRRLRVYWPLDDAWYKGRVE
AYHAASRRHRVKYDDGDEEEVDLVKEKFEWEAAAEDSTPPPARKLRRLRRMSDTSVAKSP
AVAEDSAGDSTEDEDWKRDTVVEEDSEEVELDGEDDEEVVAVRPRKGKPKNSLLMSGSTP
STLGSGLTSESGSKISKKRKNVDVASLDFAKRFTFEAVNTTRKVDPEMPMSCGQKGQTTG
NDYTALTGDAAERFGQRDAEKFKFLGEGRKDAKGRRPGSPGFDLRTLLLPPQFLKSLTGG
QRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVN
LEKLAEKGYRVLVVEQTETPEQLELRRKEMGIKDKVVRREICAVVTKGTLIEGEHLLANP
DPSYLLSVTESHQQSSKKSQDTCTIGVCIVDVSTSKFIVGQFQDDPERHGLCSILSEMRP
VEIIKPGKMLSPETEKALKNNTRKPLINELLPSTEFWDAAKTIDEIKQYYSSADKQNNAD
DIQDCVDCLPNLLCELIGAGDKTYALSALGGSLFYLRQTLLDEKILPRAEFEPLACLGLI
NNIRKHMILDAAALENLELLENMRTGGLSGTLYAQLNHCVTGFGKRLLKRWIAKPLYDRR
AILRRQSAVATFKGVGQDYAAQFRKDLSRLPDMERLLARLFSSCDENKRSSSVVLYEDAS
KRLLQQFTAALRGCQQMFHACSSISTLICTEGSQLKDLLSPGKGLPNISSILDRFRDAFD
WSEADRNGRIIPCEGCDPDYDATCYAIEEIKSSLQEYLKEQRKLLRPASVNYVDVGKDMY
LIEVPESLGGSVPRNYELQCTKKGFYRYRTPELKELILELSKAESEKESKLKGILQNLIQ
LFVEHHTEWRQLVSAVAELDVLISLAIASDYFEGPSCCPTIKELNGPDDTPTFHARNLGH
PILRSDSLGKGSFVPNDVKIGGSGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVP
AESLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTST
SDGQAIAASVLEFLVHQVQCLGLFSTHYHRLAMEHKDTKVSLCHMACEVVEGEGLEEVTF
LYRLTCGACPKSYGVNVARLAGIPISVLQRANEKSSDFEANYGKRHKMSKDKHASAQSDD
QFSVIRDFFRIVKAWPCPEDQEASISMLRELQKRAKVKAVEG
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaatggccgctcgccgctcgtgcggaaacagagccagatc
accgccttcttctcctcccctactccctccccgcccccctcgggcccgagccctggcgcg
tccaagccctctccgtcgccgctgaaccccagtgcgaggacgaggtccccgcttgccgcg
gtatccccttcccctcccaagccgcagcagccgcagcaggaacagaagaagggaaagaag
gataaggaggagcgtgatgccgtcgccgcggtgcctgcgcccttggccgcggaggtggtg
gggaggcggctgcgggtgtactggccgctggacgacgcgtggtacaaggggagggtggag
gcctaccacgcggcctcccgcaggcaccgcgtgaagtacgacgacggcgacgaggaggag
gtcgatctcgtgaaggagaagttcgagtgggaagccgccgctgaggactcgaccccgccg
ccggcgaggaagctgcggcgtctccggcggatgtctgatacctcggtggcaaaatcaccg
gctgtggcagaggatagcgcaggggattccactgaggacgaggactggaagagggatact
gtcgtggaggaggattctgaggaggtggagctggatggggaagacgatgaggaagttgtc
gcagtgcgaccgcgaaagggaaagccaaagaattccttgctgatgtcaggttcaacgcca
tcgacattgggctctggtttgacatcagagtcggggtcaaaaatttcgaagaagaggaaa
aacgtggatgtggcctcattggattttgctaaaaggttcaccttcgaagcagttaatacc
actagaaaagttgacccagaaatgccaatgagctgtggccagaaggggcaaacgacgggg
aacgactacactgctcttactggggatgcagctgagcgctttggacagcgggatgctgag
aagttcaaattccttggagaagggcgcaaagacgcaaaaggcagacgtcctggaagcccg
ggctttgatctgagaacgcttttattgccaccccagttcttgaagagtttgacaggaggg
cagagacaatggtgggaatttaaatcacagcacatggataaggttctgttcttcaagatg
ggcaaattctacgaactatttgagatggatgcacatgttggggcaaaggaccttgatctt
cagtacatgaagggtgaacagcctcactgtggattcccagagaagaatttatcagtgaat
ttggagaaattagctgagaagggttatcgcgttctggttgtggagcagaccgaaacacct
gagcagcttgaacttcggcgtaaggagatgggtataaaggacaaggttgtcaggcgtgaa
atatgtgcagtggtcacaaaaggaacactgatagaaggagagcacctactggcaaaccca
gatccttcatacctcctgtctgtgactgaaagtcaccaacaaagttcaaagaagagccaa
gacacttgtaccattggtgtttgcatagttgatgtttctacaagcaaatttattgtagga
cagttccaagatgatccagagcgccatggattgtgttcaattttgtctgaaatgaggcct
gtggaaattataaagcctggtaaaatgctgagtccagaaactgagaaggcattaaagaac
aacacaaggaagcctttaataaatgagctgcttccgtccacagaattctgggacgcagca
aagactattgatgagataaagcagtactacagctcagccgataaacagaacaatgctgat
gatatacaagactgtgtggactgtctgcctaacttattatgtgagttaattggagcaggt
gataaaacatatgcactttctgctctaggaggttccttattttatttaaggcaaaccctt
ctggatgagaaaatacttccacgtgctgagtttgagccacttgcatgcttggggctcatc
aacaatatccgaaagcatatgatacttgatgcagcagcgctggagaatctagaactttta
gaaaatatgagaactggtggcctctcagggaccctgtatgcacaattgaatcattgtgtt
actggatttggaaagaggttactcaaacggtggatcgcgaagccattgtatgatcgcaga
gcaatactacggcgtcaaagtgctgttgctactttcaagggagttggccaagattatgct
gcccagttccgtaaggatttgtctaggctccctgacatggaacgcctgcttgcacgtctt
ttctcaagctgtgatgaaaacaagagaagttcatcagttgttctctatgaagatgcatca
aagagactgcttcaacagtttactgctgcgcttcgggggtgccagcagatgttccatgca
tgttcttctattagtacattgatatgcacagagggatctcaacttaaagatttgctctca
ccaggcaaaggcctaccaaatatctcatctattttagaccgattcagagatgcatttgat
tggtcagaagcagaccgcaatggtcggatcattccttgtgaaggttgtgatcctgactat
gatgctacttgctatgcaatagaagagatcaaatccagtctacaagagtacctgaaggag
caacgaaagcttttgagacctgcatcggttaattatgttgatgttggaaaagatatgtac
ctaattgaagtgcctgagagtctgggaggttcagttcccagaaactatgagttgcagtgt
acaaaaaagggtttctatcggtaccggacgccggaactgaaagaactgatattagaactt
tcaaaggctgagtcagagaaagaatcgaaattgaaaggcattcttcagaatctgattcag
ctatttgttgagcatcacactgagtggaggcagttggtttctgctgttgctgagcttgat
gtattgataagtcttgctattgcaagtgattattttgaggggccaagttgctgtccaact
atcaaagaattaaatggcccagacgatactcctactttccatgctagaaatcttggacat
cccattctacgaagtgattccttaggcaagggttcatttgtacctaacgatgttaagata
ggtgggtcagggaatgccagctttattgttcttactggtccaaatatgggtggtaaatca
actctcctgcgccaagtttgtcttaccattatattggctcagattggagcagatgttcct
gcagaaagccttgagctttctcttgttgaccgtatctttgttcgaatgggagcaagggat
catattatggctggccaaagtacattcttggtggagctcgaggagactgcctcggtgctt
tcatcagctaccaagaattctcttgtggtattagatgagcttgggcggggtacatcgact
tctgatggacaagctatcgcggcctcagttctggaatttctagttcatcaggtgcagtgt
ctaggcttgttttctacacactaccataggttagcaatggaacacaaggataccaaggta
tcgttgtgtcatatggcatgcgaggtggtcgagggagaaggtctggaagaagtgactttc
ctttatagattaacatgtggtgcatgccctaaaagctatggtgtaaatgttgctcgatta
gcaggaatacctatttcagtgcttcaaagagcgaatgaaaagtcaagtgactttgaggcc
aattacgggaagcgacacaaaatgtccaaagataagcatgcaagtgcacagagcgatgac
cagttttctgtcatcagggatttcttccgcattgtgaaggcatggccttgtcctgaagat
caggaagcgagtataagcatgctccgtgaattgcagaagcgtgccaaggtaaaggctgtg
gaaggttag
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