Miscanthus floridulus: 136550185
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Entry
136550185 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136550185
03015 mRNA surveillance pathway
136550185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136550185
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136550185
5.6.2.5 RNA 5'-3' helicase
136550185
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136550185
mRNA cycle factors
Common to processing body (P body) and stress granule
136550185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
nSTAND3
NPHP3_N
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_32
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
136550185
NCBI-ProteinID:
XP_066397769
LinkDB
All DBs
Position
4:102640318..102653583
Genome browser
AA seq
1250 aa
AA seq
DB search
MATPPPSSAAAAVDLYETASQPDASAAGDAYTFLEFNTQGDDFDYPDFPELSQPPPRSTP
LTSSVPGAGALSSSWPAPPPPLSDAASPEPDLTPHDVPIPPASSSSPSPRSASKARSSAA
ADGLASGVAALSFEEPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKSEN
VVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQIN
KVEELWKTNPDASLEDLEKPGVDDEPQSVVLKYEDAYQYQNVFAPLIKLEADYDKMMKES
QSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIK
LTAQEEVALELRASQGVPTELNVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHH
LLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAA
IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQ
VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGD
PRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVP
NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY
IVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYND
QRLFLGGGQGVMHGAGASSQAADKRSGRGKGQSFVPYGPPNGVHKPGVHPAGYAVPRMPF
PPFPGAPHSQPYAIPTRGLHGPIGAVPPVHQPGSRNFGAPRSNTGGPIGGHLAHQQNSMQ
AMGGIGSNFNYTGMENPSSQPSGGAQLSQTGLMTQMPVQGLSQTFRDVFSIGGMSQDFFV
DDFKSQGSHVPYNIAEFSTQASQGGYGVEFTQAPQSGYSGSYMNQNAHPGYSHIGTTNDI
VSQDHMAHGSHGMFTQAGYNDPSQDESSQIHYGMAAAGPLQVAGGCLLNS
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccgccgccctcctccgccgctgccgcggttgacctatatgagacggcctcg
cagccggacgcctccgccgccggcgacgcctacacttttctcgagttcaacacgcagggg
gacgacttcgattaccccgacttcccagagctctcccaaccgccgcctcgatccacgccg
ctaacgtcctccgtcccaggcgccggcgcgttgtcctcgtcgtggcctgccccaccgccg
ccgctgtccgacgcggcctccccggaacccgatctcacgcctcacgacgttcccatcccg
ccggcctcctcctcctcgccgtcgccgcggtccgcctccaaggcgcgctcgtcggctgcg
gcggatgggctcgcctccggggttgccgcactcagcttcgaggagcctgtaggagccggc
gccggggaggacgggtacgactacggcaagggagacttcgtggaacacgcctgccggtac
tgcgggatccacaatcctgcgtgcgtggcgaggtgcaacgtgccctcctgccgcaagtgg
ttctgtaactcgcgggggaacacctctggctcccacattgtcaaccacctggtgagggca
aagcataaggaagtgtgccttcacaaggatagccctttgggagaaacaattctcgaatgc
tacaactgtggttgccggaatgtatttcttcttgggtttatctcagcaaagtcggagaat
gttgtcgttctattatgcagagagccatgtttaagtgttaatgcactgaaggatatgaat
tgggatctcagccagtggtgcccacttatcgatgacagatgtttcttgtcgtggcttgta
aaggtaccttcagagcaggagcagctaagagctcgccaaattagtgctcagcaaattaac
aaagtggaagagctctggaagacaaatcctgatgcatctcttgaagatcttgaaaagccc
ggtgtagatgatgaacctcagtcagttgttttgaagtatgaagatgcttaccagtaccaa
aatgtttttgcaccactgataaagcttgaggccgattatgacaagatgatgaaagagtca
cagagcaaggataatgtaactgtccggtgggatattgggttgaacaagaagcgtgtagct
tactttgtctttccaaaggaagacaatgagttgaggcttgtgcctggagatgagctacgc
ttgagatatcctggtgatagctcacatcccacatggcaatctgtgggacatgtgattaag
ctcactgcacaagaggaggtggcacttgagcttcgtgctagtcagggggtgcctactgag
ctaaacgttggattcagtgtggattttgtttggaagagtaccagttttgataggatgcaa
ggagcgatgaaaacttttgctgtggatgagacaagtgtcagtggatacatataccatcac
cttttggggcatgaagttgagcatcaaataatacgtaataccctgccaagacgctttggt
gcacctggacttccagaactaaatgcttcccaggttttagcagttaaaagtgtcctgcag
aagccagttagtttgattcaaggtccacctggcaccggaaaaactgtcacatctgctgca
attgtgtatcacatggcaaaacaaggtcaaggacaggttcttgtatgtgccccaagtaat
gttgctgttgatcagctggcagagaagataagctcaaccggtctcaaggttgttaggttg
tgtgcaaaatctagagaagctgtttcatctcctgttgagcatctgacacttcattatcag
gttaggcaccttgatacctctgaaaagagtgaattgcacaagctacaacaactgaaagat
gaacaaggtgaattgtccagcagtgatgagaagaagtacaaggcactaaagcgtgccact
gaaagagagatactgcagagtgccgatgtcatttgttgcacctgtgttggtgctggagat
cctcgtctttcaaacttccgtttccgacaagttcttattgatgagtccacacaggcaaca
gaacctgaatgtcttattcctttggtgcttggtgtcaagcaggttgtccttgtcggagat
cattgccaactgggtccagtcatcatgtgcaaaaaagcagcccgtgcagggttagcacaa
tctctctttgaacgccttgttatccttggagtgaagccattcaggctacaggtccagtat
agaatgcatccttgcctctcagagtttccatccaactgcttctatgaaggcacactgcaa
aatggagtgactgttaatgagaggcaatcatctggaattgattttccttggcctgttcca
aatcggcctatgttcttctatgtgcagatgggacaagaagagatcagtgctagtgggaca
tcgtatctcaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaaga
agtggtgttgtaccaagccagattggagttatcacaccttatgaaggacaaagggcatac
atcgtaaattacatgtcaaggaatggctctcttcgccaacaactttacaaggaaatcgag
gttgctagtgtagactcatttcagggtagagagaaagactacattattctgtcttgtgtt
agaagcaatgagcaccagggaattgggtttctcaatgatccgcgcaggttaaatgttgcg
ttaactcgtgcacgttatggcatagttattcttggtaatccaaaagtactaagcaagcag
ccactttggaatagcttgttgacacattacaaggagcatgagtgcttggtagaagggcct
ttgaacaacttaaagcagagtatggtgcaatttcagaagccaaaaaagatatataatgac
cagaggttgttcctgggcggtggtcaaggtgttatgcatggggctggggcctcaagccaa
gcagcagataagagaagtggcagggggaaaggacaatcatttgttccttatggtcctcca
aatggggtgcataagcctggtgtgcacccagcaggttatgctgtacctcgtatgcctttt
cctccatttcctggggctccacattctcaaccatatgcgattccgacccggggtttgcat
gggcccattggagctgttccaccggtgcatcaacctggaagtagaaactttggggcacct
cgttcaaatactggtgggcctattggtggccaccttgctcatcaacagaactccatgcaa
gctatggggggcatcgggtcaaactttaattacactggcatggagaatccgagtagtcag
ccttctggtggagcccaattgtcccaaactggattaatgacacagatgcctgtccaagga
ctaagtcaaacattccgtgatgttttttccattggtgggatgtctcaggacttctttgta
gacgattttaagagccaaggatcacatgtgccatacaacattgcagaattttctacccag
gcttctcagggcggttatggcgttgagtttactcaagcaccccaatctggatactctggg
agttacatgaaccaaaatgcacatcctggttactcccatattggtacaacaaatgacatt
gtatctcaggatcacatggcccatggatctcatggaatgtttacacaagcgggatataat
gatccctcacaagatgagtcgtctcagattcattatggaatggctgccgctggcccccta
caagtcgcaggtggttgtcttctaaattcttaa
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