Miscanthus floridulus: 136550350
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Entry
136550350 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
mflo Miscanthus floridulus
Pathway
mflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136550350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136550350
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136550350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
ATG17_like
Motif
Other DBs
NCBI-GeneID:
136550350
NCBI-ProteinID:
XP_066397993
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All DBs
Position
4:complement(112208628..112220045)
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AA seq
942 aa
AA seq
DB search
MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGFLSVSVSKAMFETIARNILLERTDCTLELYEGSGSNWRLAK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVCRESQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPADCEKSIDLNPLRDAISNCNVLLTEKKKVDFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGPLGAVLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNIAERKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AFVEDPELRQGLRQQLKRISDIGRLTHALRKKSATLQPVVKLYQSCSRISYIKGILEQYN
GQFSTLIRSKFLEPLEEWMTEDRFGRFSSLVETAIDLDQLENGEYRISPLYSSDLGVLKD
ELSVVENHINNLHVDTASDLDLSVDKQLKLEKGPLGHVFRMSKKEEQKVRKKLTGSYLII
ETRKDGVKFTSSKLKKLSDQYQTLFGEYTSCQKKVVGDVVRVSGSYSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPDITASDEGDIVLLGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLHGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFAT
HFHELTALAHKNDDEHQRVSNIGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARARLY
LEDLAALPMDEMDRSKIVEMVTKMRDDLQKDAADNPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgacttcactccggagggcggcaagctccccgagttcaagctagatgcg
cggcaagcgcagggtttcatctccttcttcaagaagctgccgcaggatccccgggccgtt
cgtctcttcgatcgcagggattattacactgcccatggcgagaatgctacgtttattgca
aggacatactaccacacaatgtctgccttgcgtcaattaggtagcagttctgatggattc
ttaagtgttagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggaa
aggactgactgtacattagagctctatgagggaagtgggtcaaattggaggttagcaaag
tctggaacacctggaaatattggtagttttgaagacattctgtttgcaaacaatgacatg
caagattcaccggtcattgttgctttgtttccagtgtgccgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaataggaagcttgggttggctgagttccccgaagat
agccgattcacaaatgttgaatcagctcttgttgcattaggttgcaaggagtgtcttctc
ccagcagattgtgaaaaatccattgatctgaatccccttcgagacgccattagtaattgt
aatgttctgttgactgagaaaaagaaggttgacttcaaatccagggatcttgcacaagat
cttggtagaataatcaggggttctgttgagcctgtacgtgatctgctatctcagtttgac
tatgctcttggtccccttggagctgttttatcttatgctgagttgctagcagatgatact
aactatggaaattacacaattgagaagtacaatttgaactgctacatgcgacttgattct
gctgcagtgcgagcattaaacattgcagaaaggaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaaaagattgcttaacaga
tggctgaaacaacctctattagatgttaatgaaattaataaccgattggacatggttcag
gcttttgtagaagacccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattggtcgtctaacacatgctctccgaaagaaatcagctactctgcagcctgttgtt
aagctttatcagtcctgtagcagaatctcatacatcaagggcattcttgagcaatataat
ggccaattttccacattgataaggtcaaagtttcttgaaccattagaagaatggatgaca
gaggatcgatttggtcggttttcttctcttgtcgagacagctatcgatcttgatcagctg
gagaatggagagtacagaatatctcccctatattcttctgacttgggtgtactaaaggat
gagctttctgtggttgaaaatcacataaataatctgcacgtggatacagctagtgatctg
gatctttctgttgataagcaactgaagctagaaaaaggacctcttggacatgtgttcaga
atgtcaaagaaagaggagcagaaagtcaggaagaagctcactggcagctacttaatcata
gaaactcgtaaagatggtgtaaagttcacaagttctaagctgaaaaagctaagtgatcaa
taccagacactgtttggtgagtacacaagttgtcagaaaaaggtggttggtgatgtagtg
agggtttcaggctcctactcagaggtatttgaaaactttgctgcagttctgtcggagttg
gatgttttacaaagttttgctgatttagcaactagttgcccagttccttatgttaggcca
gacatcacagcgtcggatgaaggagatattgttctactaggtagcagacatccttgtcta
gaggcacaagatggtgttaacttcatacccaatgattgcactcttgtgagagggaaaagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacatttataagacaggtt
ggtgtaaatgtcttgatggcgcaagttggttcctttgtaccttgtgatcaagcaagtgtt
agtgtgagggattgtatttttgctcgtgttggtgctggtgattgccaacttcatggcgta
tcaacttttatgcaagaaatgcttgaaacagcatccatcctaaaaggcgcttctgataag
tctcttataattattgatgagctgggacgtggaacttccacgtatgatggatttggtctt
gcatgggctatctgtgagcatcttatggaagtgactcgagcacctaccttgtttgccacc
catttccatgaattaactgcattagcacataaaaatgatgatgagcaccaacgcgtttca
aatatcggaattgcaaattatcatgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggtgcatgcgaccaaagttttggtattcatgttgca
gaatttgccaattttccagaagctgttgttgcccttgcaaaaagcaaagcagcagagtta
gaagacttctctactacacctaccttttctgatgattcgaaagacgaggttggatcaaag
cgcaagagggtatttagcccagatgacgtcaccagaggagctgctcgggctcggctttac
cttgaggatctcgccgcattgcctatggatgagatggataggagcaagatcgtggagatg
gtcaccaaaatgagagatgatctgcagaaagatgcggctgacaatccttggcttcagcag
ttcttctga
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