Miscanthus floridulus: 136550392
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Entry
136550392 CDS
T10264
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136550392
Spliceosome [BR:
mflo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
136550392
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
136550392
NCBI-ProteinID:
XP_066398048
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Position
1:182035618..182044070
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AA seq
768 aa
AA seq
DB search
MEQDHSAAVGSADSGAAAFDFATGNPPSSAVTGGSAVAPDSGAQAADASAYQAEHTALNG
TAGDMANYQTGAAENGEAVTNEMGEPVPEPYYEEAVLSAEEARLWSVVTANSLDFNAWTA
LIDETEKDAENNILKIRKVYDSFLAEFPLCFGYWKKYADHEARLDGVSKVIEVYERAVLA
VTYSVDIWYNYCQFAISTYDDPDIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLEAWS
HLAVIYTRVLEHPIQQLDRYFNCLKELASKHSFSEILTAEEASVYVVTSETSAQAPDGEA
HPDDVDKSGQPEISSSTDAENLAKYVSMREEMYKKAKEYESKIIGFELAIRRPYFHVKPL
DNPELENWHNYLDFIEKEEDINKVIKLYERCVIACANYSEFWIRYVQCMEDKGSLDLANN
ALARATHVFVKKQPEIHLFSARFKELNGDISGARAEYQHLYSDLCPGFLEAIVKHSNMEH
RLGEKELSCTVYEKAIAAEKGKEQSQLLPTLLIQYSRFLFLAVRDLEKAREILNVLHEQL
NVTKPVLEAVIHLESIFPCEKRIEFLGSLVEKFVTPESSQGEVASLVDKEEISSIFLEFL
DLFGDAKSIKKALTRHTTLFSCKRSILPSKKRKGDDAVVSDRDKFAKTGATQSATGTDPN
ASNPPVWPATSEASGQQWGASYAQQATYPAYGTYDYSHQMPQPAPQAAAYGAYPPSYSAQ
TYTQQSYAQPTAIPAAPVPAVVPAATPASAYPQQPAAAPQPYYGTTYY
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagatcacagcgcagcggtcggcagcgcggactctggtgccgcggcttttgat
tttgcgactggcaatccacctagctcggctgtgaccggcggaagcgccgtggcccccgac
agtggtgctcaggcagctgatgcctctgcctaccaggccgagcacacggcgttgaatggg
acggctggcgatatggctaattaccaaacaggagctgcagagaacggcgaagccgtcacc
aacgagatgggcgagccggttcctgagccatactacgaggaagctgtgctttcagcagaa
gaggctagattatggagtgttgttactgcgaattccttagattttaatgcctggaccgcg
cttattgacgaaacggagaaagatgctgagaacaatattttgaagatacggaaagtgtat
gattcgtttcttgcggaattccctctttgctttgggtattggaagaaatatgctgatcat
gaagcgagacttgatggcgttagtaaagttatagaggtgtatgaacgagcagttcttgca
gttacttattcagtggacatttggtataactattgtcagttcgcaatttcaacatatgat
gacccagatatcatccgaagactgtttgaacgtggcttggcatacgttggaacagattat
cgttccaatattttgtgggatgagtatattaagtatgaagagtcactggaggcttggagt
catctagctgttatatatacaagagtattggagcatcccatccagcagcttgatcggtat
tttaactgcctcaaggaattggcttcgaagcacagtttttcagaaatacttaccgcagaa
gaagcttcggtgtatgttgtcacgtctgagaccagtgctcaagcgcctgatggtgaggca
catcctgatgatgtcgataagtctggtcaaccagaaatttcatcttcaacagacgcagag
aaccttgcaaagtatgtctccatgagggaagagatgtacaagaaggctaaagagtatgaa
tctaagatcattggttttgagctagctattagaaggccatattttcacgtcaagcctctt
gacaatccagagcttgaaaattggcataactaccttgactttatcgagaaggaagaagac
attaataaggttatcaaattgtatgaaaggtgtgtaattgcatgtgctaattattcagaa
ttctggatccgctatgtgcaatgtatggaggataaagggagtctagatctagcaaacaat
gccctggctcgtgctactcatgtgtttgtgaagaagcagccggagatccatctgtttagt
gcgaggtttaaggagcttaatggggatatttctggagcacgtgcagaatatcagcatctt
tactcagatttatgtcctggctttctagaggccattgtgaagcattctaatatggaacac
cgcctgggagagaaagaattatcctgcacagtttatgaaaaggccatcgctgctgagaag
ggaaaggaacagagccagctcttgccaacgttgcttattcagtactcccgtttcttattt
ttggccgtccgagacttggagaaggcaagggagatattaaatgtgctgcatgagcagtta
aatgtaacaaagccagtgcttgaggctgtcatccatctagagtcgatttttccatgcgaa
aagcgtattgaatttttaggctcacttgtggagaagtttgttacacctgaatcatctcag
ggagaggtggcaagtctagttgacaaagaagaaatatcttccatatttttagagtttttg
gatctctttggggatgcaaagtcaatcaagaaggctttaactcggcatacaactcttttt
tcatgtaagagaagcattctgccatcaaagaaacggaaaggagatgatgctgttgtgtca
gacagggacaaatttgctaaaactggggctacacagtcagccacgggaactgatccaaat
gcttccaatcctcctgtttggcctgcaacttctgaagcatctgggcaacaatggggagct
tcttatgcacagcaggctacgtatcctgcatatggaacttatgactacagccatcaaatg
cctcagcctgctcctcaagcagctgcctatggtgcatatcctccatcatactctgctcag
acctatacacaacaaagctacgcacaacctacagcaattccagcagctccagtgccagca
gtggtaccagcagctacaccggcatcagcttaccctcagcagcctgcggcagctcctcaa
ccttattatggcacaacctactactga
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