Miscanthus floridulus: 136550491
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Entry
136550491 CDS
T10264
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136550491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136550491
03041 Spliceosome [BR:
mflo03041
]
136550491
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136550491
Spliceosome [BR:
mflo03041
]
Complex B
Other components
Prp19-related factors
136550491
Complex C
136550491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
PPR
ARM_TT21
TPR_15
ARM_TT21_C
UTP6_C
Motif
Other DBs
NCBI-GeneID:
136550491
NCBI-ProteinID:
XP_066398173
LinkDB
All DBs
Position
4:complement(117912362..117917870)
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AA seq
928 aa
AA seq
DB search
MPSASGQVAVASASAAAKAAPSVAVGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRDRLDHARPYPIDHPAYSSLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRARRSFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANHWQEAANRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGI
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDENEGGGRKSGMDKLSRKFLDEF
WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRRAAADGDEPVQMKVHKSLKMWSFYVDLEES
LGTLDSTRAVYERILDLRIATPQIILNYAYLLEEHNYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPEEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYADPNNPDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPVPSTAPAAAPSTAPAS
ANRMMNFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAENNEESSGAQGNEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcgtcgggtcaggtggccgtggcgtcggcttcggcggcggcgaaggccgcg
ccgtctgtggccgtcgggatctcgccggacctgtacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcccttcaaactcaaggggtggtggcgctacctcgtggcc
cgcgccgccgcgccgttcgccaagcgcgccgtcatctacgagcgcgccctgaaggcgctc
ccggggagctacaagctctggcacgcctacctccgcgaccgcctcgaccacgcgcgcccg
taccccatcgaccacccggcctactcctccctcaacaacaccttcgagcgggcgctggcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacgcgcgcacgccgctctttcgaccgcgccctgcgggcgctccccgtcacgcag
cacgaccgcatctggccgctgtacctccgcctcgcctcgctcccggcctgccccgtcgag
acgtcgctccgagtcttccgccgatacctccaattcgacccctcccacgccgaggacttc
atcaacttccttatatccgccaaccactggcaggaggccgccaaccgtctagcttcagtg
ctcaacgacgacgggttccgctccgtcaaggggaaaacaaggcaccagctctggctcgag
ctctgcgagatcctcaccaagcatgctgatgaggttgctggcctcaaggtggacgccatc
ctgcgtggcgggatacgcaagttcaccgatgaggtcggcaagctttggacctcactggct
gattactatgtcaggagaggccttttcgaaaaagctagggatgtatttgaggagggcatt
tcttcagtggttaccgtcaaggagttcagcgtggtgtttgaggcatatacacagtttgag
cagagtatgcttgcggcaaagctggaggctgctgaggaagaaggggctgaggatgagaac
gagggaggtggcaggaagagtgggatggataagttatcaaggaaattcctcgatgaattc
tggttgaacgatgaggatgatactgatttgaggatggcaaggtttgagcggctgttggat
cgcagaccagagcttcttagcagtgtgctgttgcgacagaatccacacaatgtggaggag
tggcacaggagggtgaaactctttgaaaaggatcctgcgaggcaagtagcgacatatgtt
gaggccgtgaaaactgtagacccaatgaaggcagttgggaagccccatactttgtgggtg
gcatttgcaaagatgtatgagaaacacaatcgtctagatagtgctgaagatattttcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgagtgg
gcagagatggagctgcgccacaacaattttgacaaggctattgagctgatgaggcaagca
acggcagagccctctgttgaggttaagaggcgggctgctgctgacggggacgagcctgtc
caaatgaaagtgcacaaatctttgaaaatgtggagcttttatgttgatctggaggagagc
cttggaaccttagactctacccgtgcagtttatgagagaatattggatttacgaattgcc
actccacagataattctcaattatgcatatcttcttgaggagcacaattatttcgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccacgttaaggccatt
tgggtgacctaccttacaaagtttgtacagagatacaagagaagcaagttagaacgagca
agagagcttttccatgaagctgtccaacaggctcctccagaggaaaagaagcccctatat
ttacaatgggcaaaactggaggaagactatggtcttgccaaacgtgctatgaatgtatat
gatgaagctgtaagagctgttcctaacagtgaaaaaatggctatgtatgaaatctatata
gcacgtgctgccgaactcttcggtgttccaaggacaagacaaatatatgagcaagcaatt
gaatctggcctcccagacagagatgttctgacaatgtgcatgaaattcgctgagttagag
agaagccttggggaaattgatcgttcgcgtgccatctatgtgcatgcatccaactatgct
gatccaaacaatcctgacttttggaagaagtggaatgattttgagattcagcacggtaac
gaagacacattcagagagatgcttcgtatcaaacgtacagtggctgctagccgcagtcag
acacatttcatactaccggagtacttgatgcagagggatcagaggttaaacctggacgaa
gcagttgacactctgaagcgtgctggcgtccctgaagatgagatggcagccttggaaagg
caactggctcccgtaccatccactgcaccagcagcagcaccaagcactgccccagcctct
gctaacaggatgatgaactttgtcagtgctggagtagaggcgcaggccgagagcagcagg
caacaggctggtaacaatgaggacattgagctgcccgacgagagtgacgacgaggaaccc
gatgtccaaattgcagagaagagtgttcctgctgcggtatttggtgagcttggcaagaga
gctgccgagaacaatgaggaaagctcaggtgcccaagggaatgagcagctgggcgccctc
gaaaggataaagagacggcgccaatag
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