Miscanthus floridulus: 136550595
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Entry
136550595 CDS
T10264
Name
(RefSeq) uncharacterized protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136550595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136550595
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136550595
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
136550595
Messenger RNA biogenesis [BR:
mflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
136550595
DNA repair and recombination proteins [BR:
mflo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
136550595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
DUF5585
Motif
Other DBs
NCBI-GeneID:
136550595
NCBI-ProteinID:
XP_066398307
LinkDB
All DBs
Position
4:121753855..121768269
Genome browser
AA seq
901 aa
AA seq
DB search
MEAALKGYFGYSTFRPYQREIIQKVLDGRDCLAVMATGSGKSICYQIPPLVTKKTAVVVS
PLLSLMQDQVMSLKQKGVKSEYLGSTQMNSSVSNEAEKGAFDVLYMTPEKAISLPSRFWS
NLQAAGICLLAVDEAHCISEWGHDFRMEYKQLHSLRDLLVGVPFVALTATATKRVRQDIS
TSLVLRSPHVVVGSFDRSNLFYGVKTCNRSMSFISELVKNVSKKSAAGESTIIYCTTIRD
TEQVHEALVTSGIRAGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFTKADFYCSEAKNGTQRKAIMDSF
MAAQKYCLLATCRRRFLLQYFGEECNSDCGNCDNCTAVKNERDLSKEAFLLLSCIKSCGG
RWGLNLPIDVLRGSRAKKIVDNNYDKLQMHGRGKDYSSNWWKALGGLLIAHDYLKETVRD
TFRFVSVSPKGVKFLSTADKMDGTPLVFQLTAEMIELEEHGSSHHKEGGGLNPVPTLESE
KISEDESKLYQMLLNVRMKLAQDIGTAPYAICGDQTIRNFAKMRPSTGARLANIDGVNQH
FISRFSNIFIQNIAQLSKELNLPLDNSPLPLPTTNPAVENIAGIPKPLQNNLPGILGDAK
LTAWELWHKQEYSFLKIAYFRRAVPIKEQTVIAYILDAAREGCEMDWSRFCREVGLTPDI
ATAIRLAISKVGSREKLKPIKEELPENVTYDMIKTFLTIEGCGLSEQVFGNGTADGVPSR
IAESPISSSHASEASRNDMGDGVPVAEASDANPSAKRGQTVSAEEPATKLQRIDEHGAKS
TGTAAATEESVLALVASCNGVSLEDVAKHFKGSKRESVLAILEGLESQFIIYKRNGNYMI
L
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcgctgaagggctattttgggtactcaacgttccggccgtaccagagggag
atcatacagaaggtcctggatgggcgggattgcctcgccgtcatggccaccggcagcggc
aagtccatctgctatcaaattcccccactggttacaaagaagacagctgttgttgtaagc
cctcttctgtccctgatgcaagaccaggttatgagtttaaaacaaaaaggtgtgaaatct
gagtaccttggcagcacccaaatgaatagctccgtcagcaatgaggcggaaaagggcgcg
tttgatgtgctgtacatgacaccagagaaagccatttcacttccttcaaggttttggagt
aacttgcaggctgctggaatctgcttgttagctgtcgatgaagctcattgcatatcggaa
tggggccatgatttcaggatggagtacaagcagctgcattcattgcgcgaccttcttgtg
ggtgttccctttgttgctttaactgccactgccacaaaaagggtacgccaagatatttct
acttccttggttctacgcagtcctcatgtggtggttggctcatttgatcgttctaacctt
ttctatggtgtgaaaacatgcaaccgatctatgtcctttataagtgaacttgtgaaaaat
gtttcaaagaagagtgctgcgggtgagtcaacaataatatattgtacgaccatccgggac
acagaacaggttcatgaggctttagttacttctggaatcagggctggaatttatcacggt
caaatgggcagcagagctagagaggaatcccatagatccttcattagggatgaagttctt
gtgatggtggcaactatagcttttggaatgggtattgataagcctgatgttagatgtgta
atacactatggatgtccaaagagcctagagtcctactaccaggaaagtgggcgttgtgga
agagatggactgccttcagtctgctggctatattaccaaagaagtgattttacaaaagct
gatttctattgttctgaggcaaaaaatggaacccagagaaaagcaatcatggattccttc
atggcagcacaaaaatattgcctccttgctacatgccgtagaaggttcttattgcaatat
tttggtgaagaatgcaacagtgactgtggcaattgtgataattgcacagcagtgaaaaac
gagagggatttgtcaaaagaagcctttctgttgctgtcctgcatcaaatcttgtggagga
cgctggggcctcaatttacctattgatgttcttcgtggatcacgagccaagaagattgtt
gacaacaattatgataaactacaaatgcatggacgtggtaaagattattcgtcaaactgg
tggaaagcacttggtggtctccttatagcacacgattatttgaaggagactgttcgtgat
acatttagatttgtcagtgtcagtccaaaaggggtcaagtttctctctactgctgataaa
atggatggaacaccactggtatttcagctgactgcagagatgattgaactagaggagcat
ggtagttcacatcataaagaaggtggtggtttaaatcctgtaccaacattagaatctgaa
aaaatttctgaggatgaatcaaaactctatcaaatgctcctgaatgttaggatgaagctt
gctcaagatattggcactgctccgtatgctatatgtggtgatcagacgataagaaacttt
gcaaagatgagaccttctactggagctagacttgctaatatcgatggtgtcaaccagcat
tttatctcacgtttcagtaacattttcatccaaaatatcgcgcaattgtcgaaggagtta
aacctcccgttggataattcaccattaccactaccaacaacaaatccagctgtagaaaat
attgctggtataccaaaacctttacaaaacaatcttcctgggatcttgggtgatgcaaag
ctgactgcttgggaattgtggcataagcaggagtactcattcctgaaaattgcttatttc
cgcagagcagtgccaataaaagagcaaacggttattgcgtacatacttgatgctgctcga
gaaggatgtgagatggactggagtaggttttgcagggaggtagggctgacacctgatata
gccaccgcgatccgtcttgcaatctcaaaggttggatcacgtgagaagctgaagccaatc
aaagaggagctcccagagaatgtaacttacgacatgatcaagacattcctgactattgag
gggtgtggattgtcagagcaagtctttggtaacggtactgctgatggggttcctagtaga
atagcagagtccccaatatcttcctcccatgcaagtgaagctagcagaaatgatatggga
gatggtgtcccagtggcagaggccagtgatgcaaacccttcagcaaagagaggccaaact
gtttctgctgaggagccagcaacaaaactgcaaaggatagacgagcatggggcaaagtca
actggcacagcggctgccactgaagaatctgtgctagctctggttgcgagctgcaatggg
gtatcactggaggatgttgccaagcacttcaagggatccaagagagaatcggtcttggcg
atattggagggccttgaatctcaattcataatttacaagagaaacgggaactacatgatc
ctgtga
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