Miscanthus floridulus: 33912258
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Entry
33912258 CDS
T10264
Symbol
rpoB, CK855_pgp097
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
33912258 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
33912258 (rpoB)
03400 DNA repair and recombination proteins [BR:
mflo03400
]
33912258 (rpoB)
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
33912258 (rpoB)
Transcription machinery [BR:
mflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
33912258 (rpoB)
DNA repair and recombination proteins [BR:
mflo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
33912258 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
33912258
NCBI-ProteinID:
YP_009421732
UniProt:
A0A224L634
LinkDB
All DBs
Position
Pltd:21953..25180
Genome browser
AA seq
1075 aa
AA seq
DB search
MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLL
EPSIKERNAVYESLTYSSELYVSARLIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIV
INQILLSPGIYYRSELDHKGISICTGTIISDWGGRSELAIDKKERIWARVSRKQKISILV
LSSAMGSNLREILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSES
LCEELQKKFFQQKCELGRVGRRNMNRRLNLDIPQNNTFLLPRDVLAATDHLIGMKFGTGI
LDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTS
TSILLITTYETFFGTYPLAQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPS
HYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSIESPFYEISEKAKEKKERQVVYLSPN
RDEYYMIAAGNSLSLNQGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLIP
FIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIISSDS
HKILLSSSGKTISIPLVAHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELALG
KNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKQIPH
LEEHLLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSK
ETSLKLPIGGRGRVIDVKWIQRDPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILP
RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA
SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD
EKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIA
RQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSEKNFRVNREDV
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgctccggaatggaaatgagggaatgtccacaatacccggatttagtcagatccaattc
gagggattttgtagattcattaatcaaggcttggcggaagaacttgagaagtttcccaca
attaaagatccagatcacgaaatttcatttcaattatttgcgaaaggatatcaattgcta
gaaccctcgataaaagaaaggaatgctgtgtatgaatcactcacctattcttccgaatta
tatgtatccgcgagattaatttttggtttcgatgtgcaaaagcaaaccatttctattgga
aacattcctataatgaattccttaggaacctttataataaatggaatataccgaattgtg
atcaatcaaatattgctaagtcctggtatttactaccgctcggaattagaccataaggga
atttctatatgcaccggtactataatatcagattggggaggaaggtcggaattagcaatt
gataaaaaagaaaggatatgggctcgcgtgagtagaaaacaaaagatatctattttagtt
ctatcatcagctatgggttcgaatctaagagaaattttagataatgtttcctaccccgaa
attttcttgtctttcccgaatgctaaggagaagaagaggattgagtcaaaagaaaaagct
attttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggagtcc
ttatgcgaggaattacaaaagaaattttttcaacaaaaatgtgaattaggaagagttggt
cgacgaaatatgaatcggagactgaatcttgatatccctcagaacaatacattcttgtta
ccacgagatgtattggccgctacggatcatttgattggaatgaaatttggaacgggtata
cttgacgatgacgatatgaatcacttgaaaaataaacgtattcgttcggttgcagatctg
ttacaagatcaattcggactggctcttggccgtttacaacatgcggttcaaaaaactatc
cgtagagtattcatacgtcaatcgaaaccgactccacaaactttggtaactccaacttca
acttcgattttattaattactacttatgagaccttttttggcacataccccttagctcaa
gtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagttgtttg
ggtcctggaggattgacggggagaactgcaagttttcgtagccgagatattcatccgagt
cactatgggcgtatttgtccaattgacacgtccgaaggaatcaatgttggacttaccgga
tcgttagctattcatgcgagaattgatcactggtggggatctatagagagtccgttttat
gaaatatctgagaaagcaaaagaaaaaaaagagagacaggtagtttatttatcaccaaat
agagatgaatattatatgatagcagcaggaaattctttgtccttgaatcagggtattcag
gaagaacaggttgttccagctagataccgtcaagaattcctgactattgcatgggaacag
attcatgttagaagtatttttcctttccaatatttttctattggaggttctctcattcct
tttattgagcataatgatgcgaatcgggctttaatgagttctaatatgcagcgccaagca
gttccactttctcggtccgagaagtgcattgttggaactggattggaacgacaaacagct
ctagattcgagggtttccgttatagccgaacgcgagggaaagatcatttctagtgatagt
cacaagatccttttatcaagtagtgggaagaccataagtattcctttagttgcccatcga
cgctctaacaaaaatacttgtatgcaccaaaaacctcgggttccgcggggtaaatccatt
aaaaaagggcaaattttagcggagggagcagctacagttggcggggaacttgctttagga
aaaaacgttttagtagcttatatgccctgggagggttacaattttgaagacgcagtacta
attagtgaacgtttggtatatgaggatatttatacttcttttcacatccgaaaatatgaa
attcagacggatacgacaagccaaggctccgctgaaaaaatcactaaacaaataccacat
ctagaagaacatttactccgcaatttggacagaaatggagttgtgaggttgggatcctgg
gtagaaactggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcg
tatatcgcggaagctggattattacgggctatttttggtcttgaggtatccacttcaaaa
gaaacttctctcaaactacctataggtggaagagggcgcgttatcgatgtgaaatggatc
cagagggacccctttgacataatggttcgtgtatatattttacagaaacgtgaaatcaaa
gttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcct
aggcaagatatgccctatttgcaagatggaacacctgttgatatggtcttcaatccctta
ggagtaccctcacgaatgaatgtgggacaaatatttgaaagctcgctcggattagcaggg
gatctgctaaagaaacattatagaatagcaccctttgatgagagatatgagcaagaggct
tcaagaaaacttgtgttttcggaattatatgaagccagtaaacaaacaaaaaatccatgg
gtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagatccc
ttcgaacagcctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgat
gagaaaattcatggacgttctactgggccctactcacttgttacccaacaacccgttaga
ggaagagccaagcaagggggacaacgaataggagaaatggaagtttgggctttagaagga
tttggtgttgctcatattttacaagagatacttacttataaatctgatcatcttatagct
cgccaagaaatacttaatgctacgatctggggaaaaagagtgcctaatcacgaggatccg
ccagaatcttttcgagtgctcgttcgagaactacgatctttggctctagaactgaaccat
ttccttgtatctgagaagaacttccgggttaatagggaggatgtttga
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integrated database retrieval system
