Mycoplasmopsis fermentans M64: MfeM64YM_0900
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Entry
MfeM64YM_0900 CDS
T01402
Symbol
vacB
Name
(GenBank) VacB-like ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfm
Mycoplasmopsis fermentans M64
Pathway
mfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MfeM64YM_0900 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfm03019
]
MfeM64YM_0900 (vacB)
03016 Transfer RNA biogenesis [BR:
mfm03016
]
MfeM64YM_0900 (vacB)
Enzymes [BR:
mfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MfeM64YM_0900 (vacB)
Messenger RNA biogenesis [BR:
mfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MfeM64YM_0900 (vacB)
Transfer RNA biogenesis [BR:
mfm03016
]
Prokaryotic type
tRNA degradation factors
MfeM64YM_0900 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
3H
Motif
Other DBs
NCBI-ProteinID:
ADV34895
UniProt:
A0AB32XCX4
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All DBs
Position
complement(948395..950578)
Genome browser
AA seq
727 aa
AA seq
DB search
MNPQEILNFLKKHDNSTFIDIAKVLRISYKDNKKLTELLNKLIDERKLIKNGKLSTYSLI
EKIKIVQGKIRFASEGKYAFVEEENDNPEAEKISYFVPGIHLNRALDGDFVEITVLKYFH
SLDDKTFAIVEKVLSRNSDKFIGILGMHEGFLSFKPLKNDYKKINFHIKELVKEARLHDV
VLGQMVSFKNNIIELNIIKKIANSNDPMAYVKALTVIRNKPEDFPQEVKDYLVKIPNSIA
DEKLNNRLDLRKELIVTIDGNDTKDFDDAINVKKNADGTYELGVHIADVSYYVKEDSSLD
VEALKRGTSRYLVSGVIPMLPHKLSNGICSLNPNEDRFTLSAIMTIDKNGDTIDAKFYQS
IIQSKYRLTYDRVNELYDKNQKFDDPKLNRMLYEAAELAKIIRNYKVKEGYIDFEIEEPE
IVLDDKGKTIDVVVKPTGFSENLIEDFMVRTNEEVAKFLAKRKIPFIYRVHESPDSDKID
SFLSVLNVLGIKVNIDRNDINPKSFQKIINKIKETRNDDFLKTVFLRTMQKAKYSTNNIG
HFGLASEHYCHFTSPIRRYPDLVVHRILREIVFNNDKSKITHYKNILSNVAELNSNSEQE
ALQLERDTNDLKYAEFFKNKIGQTMKAQIISILRFGMFVQFDCKIEALVHISTLCDGDYE
VNENFTELRSKQHTFKLGDQVEVVIAGADETNGKIDAVLAKCYGSYLEEIKKKLNSNSNR
KHKKSGK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgcaagaaatattaaattttttaaaaaaacatgataattcaactttcattgat
attgcaaaagtcttaagaataagttataaagataacaaaaaattaaccgaattactaaat
aaattaattgatgaaagaaaattaattaaaaatggcaaactctcaacttattcattaata
gaaaaaattaaaatcgtccaaggaaaaattcgatttgcttcagaaggcaagtatgctttt
gtagaagaagaaaatgataatcctgaagctgaaaaaataagttattttgtacctggtatt
catcttaatagagcattagatggagactttgttgaaataacagttttaaaatactttcat
tctttagatgataaaacttttgcaattgttgaaaaagttttaagcagaaacagtgataaa
ttcattggtattttaggtatgcatgaaggttttctttcatttaaaccacttaaaaatgac
tacaaaaaaattaattttcatattaaagaattggttaaagaagctagacttcatgatgtt
gttttaggtcaaatggtttcatttaaaaataatattattgagcttaacattatcaaaaaa
atagctaacagtaatgatccaatggcttatgttaaagccttaacagttattagaaataaa
cctgaagatttcccacaagaagttaaagattacttagttaaaattccaaatagtattgca
gatgaaaaacttaataatagacttgacttgagaaaagaattaattgttactattgatggt
aatgacacaaaagactttgatgatgcaattaatgttaaaaagaatgctgatggaacttat
gaattaggcgttcatattgctgatgttagttattatgtcaaagaagacagctctcttgat
gttgaagcattaaaaagaggaacctcaagatatttagttagtggcgttattccaatgttg
cctcataaattatcaaatggtatttgctcacttaatcctaatgaagatcgctttactctt
agtgcaataatgacaattgataaaaatggtgatactattgatgctaaattttatcagtca
ataattcaatcaaaatatcgtctcacatatgatagggttaatgaactttatgataaaaat
caaaaatttgatgacccgaaattaaatcgaatgctctatgaagcagctgaattggcaaaa
ataattagaaattataaagtcaaagaaggctacattgattttgaaattgaagaacccgaa
attgtcttagatgataaaggtaaaacaattgatgttgtagttaagccaactggttttagt
gaaaatcttattgaagatttcatggttagaactaatgaagaagtagctaaatttttagct
aaaagaaaaataccttttatttatcgtgttcatgaaagccctgatagtgacaaaattgat
tcatttttgagtgtacttaatgttttaggtattaaagtaaacattgatcgaaatgatatt
aatccaaaaagttttcaaaaaataatcaacaaaattaaagaaacaagaaatgatgacttt
ttaaaaacagttttcttaagaacaatgcaaaaagctaaatattctacaaataatattggc
cactttggtttagcaagtgaacactattgtcactttactagtccaattcgacgttatcca
gatttagttgttcataggattttaagagaaattgtttttaacaatgataaaagtaaaatt
actcactacaaaaacattttaagtaatgttgcagaattaaattcaaatagtgaacaagaa
gcattacaacttgaacgtgatacaaatgatttaaaatatgctgagtttttcaaaaacaaa
attggtcaaacaatgaaagctcaaattattagtattttacgctttggtatgtttgtccaa
tttgactgcaaaatagaggctttagttcatatttcaacattatgtgatggtgattatgaa
gttaatgaaaactttactgaattaagaagtaaacaacacacttttaaacttggagaccaa
gtagaagtggttattgctggagctgatgaaactaacggtaaaattgatgcagtgcttgca
aaatgctatggttcatacttagaagaaatcaagaaaaaacttaattcaaactcaaatcgc
aaacataaaaaatcaggtaaataa
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