Mariprofundus ferrinatatus: Ga0123462_1866
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Entry
Ga0123462_1866 CDS
T05213
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfn
Mariprofundus ferrinatatus
Pathway
mfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0123462_1866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfn03019
]
Ga0123462_1866
03009 Ribosome biogenesis [BR:
mfn03009
]
Ga0123462_1866
Enzymes [BR:
mfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ga0123462_1866
Messenger RNA biogenesis [BR:
mfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0123462_1866
Ribosome biogenesis [BR:
mfn03009
]
Prokaryotic type
rRNA helicases
Ga0123462_1866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
AAA_30
P-loop_SecA
WH_MCM3_C
Motif
Other DBs
NCBI-ProteinID:
ATX82709
UniProt:
A0A2K8L8X1
LinkDB
All DBs
Position
complement(1895403..1897277)
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AA seq
624 aa
AA seq
DB search
MTTNENSQPTFSELNLAPAVLKAVQDVGYETPSPIQAQTIPFLLEGRDVLGQAQTGTGKT
AAFALPLLSRIDLEKSSPQLLVLAPTRELAIQVAEAFQTYAKHLKGFHVLPIYGGQSYEI
QLRALKRGVHVVVGTPGRVMDHMRRGTLKLGALRALVLDEADEMLRMGFIDDVQWILEQT
PSERQIALFSATMPPVIRTIAEKHLNNPEQVTVKVKTTTAETIRQRYLIASGRQKMEALT
RILEAEPFDGMIIFVRTKTSTEEIAEKLEARGFSASALNGDITQKMREATVNRLKNGQID
IIVATDVAARGLDVERISHVINYDIPQDTEPYVHRIGRTGRAGRKGDAILFIAPREKRML
YAIERATKQKIELFEMPTTESINNKRIAEFKQRITDTLESDESLELFSGIVDQYCADHEV
SAGEVAAALAKMVQGDKSLLLKDAPKREFKERAERNPRFDVPEDKRRSVQNRRVETVETL
EDASSPRPRREKPARTFSGPKPEKGMERYRLEVGEMHGVKPGNIVGAIANEMGLESEFIG
NIQIMDDHSTVDLPEGMPRELYKQFCQIRVAGRTLDATSLSEPAGSRPPAPKKRRGGPSD
ARGGKRPPRRSDAPKGRGKPPRRK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaatgaaaattctcagcccacattcagtgagctgaatctggccccggccgta
ctcaaggcagttcaggacgtcggctacgaaaccccatctcccatccaggcacagacaatt
ccattcctccttgagggcagggatgtgctcggccaggcacagactggcaccggcaagacg
gctgcttttgcactaccgctgctctcccgtattgatcttgagaagagttcgccgcagctg
ctggttctggcgccgacccgtgagttggccatccaggtggcagaggctttccagacctat
gccaaacacctgaaagggttccatgtgctaccgatctacggtggccagagttatgagatt
cagttgcgagcactgaaacgcggcgtgcatgttgtggtcggtacacccggccgcgtgatg
gaccatatgcgtcgcggcacgttaaagcttggcgcacttcgcgccctcgtgctcgatgaa
gcggatgagatgctgcgcatgggctttattgatgacgtacagtggattctcgagcagacc
ccgtctgagcgtcagattgcactcttctcagccaccatgccgccggtgattcgcacgatt
gcggagaagcatctgaataatcccgaacaggtgactgtgaaggtgaaaaccacgacggcg
gagaccattcgccagcgttacctgatcgccagcggtcgccagaagatggaggcgcttacc
cgcattctcgaagcagagccttttgacggcatgattatttttgtgcgcaccaaaacatcc
accgaagagattgccgagaagcttgaggcccgtggtttttcagcgtcagcgctcaatggt
gacatcacccagaagatgcgtgaggcgacggttaaccgcctgaagaacgggcagatcgat
attattgttgctaccgacgttgccgcgcgcggcctcgatgtggagcgcatctcgcatgtg
atcaactacgacatccctcaggatactgagccctatgtgcaccgtattggccgtaccggt
cgtgcaggccgcaaaggcgatgccatcctctttatagcaccgcgtgaaaagcgcatgctt
tatgccattgagcgggcgaccaagcagaagattgaactgttcgaaatgccgacaaccgaa
tcgatcaacaacaagcgcattgccgagttcaagcagcgtatcacggatacgctcgaatca
gacgaaagcctggagctgttttccggcatcgttgatcagtactgcgcggatcatgaggtg
agtgctggtgaggttgcagccgcacttgccaagatggtgcagggagacaagtcactgctg
ctcaaggatgcaccaaagcgcgaattcaaagagcgtgctgagcgcaatccccgtttcgat
gtgcccgaagataagcgcagaagcgtccagaatcgcagggttgaaactgttgaaacactt
gaggatgcatcttctcccaggcctcgccgtgaaaagccagccagaaccttcagtgggccg
aagccggagaagggtatggaacgctaccgtctcgaggtcggtgaaatgcacggtgtgaaa
ccgggtaacattgtcggtgcaattgccaacgagatgggactggagtcggagtttatcggc
aatatccagatcatggatgatcacagtacggttgatcttccggaagggatgccgagagag
ctctataaacagttctgtcagatccgggttgcaggacgcacgctggatgccacaagtctc
agcgaaccggcaggcagcaggcctcctgcgccaaagaagcgtagaggtggcccgtccgat
gcaaggggagggaagcgccctccgcgccgcagtgatgcgccaaaaggcaggggaaaaccg
ccacgccgaaaataa
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