Methanoregula formicica: Metfor_1082
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Entry
Metfor_1082 CDS
T02392
Name
(GenBank) exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
mfo
Methanoregula formicica
Pathway
mfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Metfor_1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfo03400
]
Metfor_1082
Enzymes [BR:
mfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Metfor_1082
DNA repair and recombination proteins [BR:
mfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Metfor_1082
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
SSB
Motif
Other DBs
NCBI-ProteinID:
AGB02130
UniProt:
L0HDP0
LinkDB
All DBs
Position
complement(1057166..1058422)
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AA seq
418 aa
AA seq
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MDWFNTPDEPEKKAAPAAPLLVSELSAIISDLLDDPRLQDVRVRGEVTNYKHHGSGHRYF
SLSEKGGGSTAAVIKCVMWRSDADRLAFRPEEGMEVVVTGSVTLYAPHGAYQLRVRSMEK
AGLGEKYLLLEKWKKELAAEGLFSQERKRDLPAFPLRIGVVTSETGAVIHDIRNVITRRY
PVEIIISPTAVQGEEAHGEIAAAVRRLSGLADVVIVARGGGSFEDLFPFNHPDVVRAIAS
CPVPVVSAIGHEVDVTLADLAADVRAPTPSAAAELAVPDRNTLRLQLFELRDLMGSALIG
RLAWAKEEISGLRDRLRPRRLAQKIEERQQFAADLAERLERACSTRLERERLVLAGMRVA
LDSHNPSAVLSRGYCVAEKDGTIVKSTGRLAEKDRLRLRFYDGSSQVIVERVHHDGNV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggactggttcaacacccctgatgagccggaaaagaaggctgcaccggcagccccattg
ctcgtctccgagctctcggccatcatcagcgacctgctcgatgacccccggctccaggat
gtccgggtccggggcgaggtgaccaactacaagcaccatggcagcgggcaccggtacttc
tccctctcggagaagggaggtggaagcacggcagccgtgatcaagtgcgtgatgtggcgc
tcggatgcggaccgacttgccttccggccggaagagggaatggaagtcgttgtaacggga
tcggtcaccctgtatgccccgcatggagcgtaccagctccgggtgcggtccatggaaaag
gcagggctcggtgagaagtacctgcttcttgagaagtggaagaaggaactcgcggcagag
ggacttttctcccaagagcgcaagcgggatctgcccgcattcccgttgcggatcggggtg
gtcacttccgagaccggggccgtgatccacgatatccgcaatgtcatcacccggcgttac
ccggtcgaaatcatcatctcccctaccgctgtgcagggggaggaggcacacggggagatt
gccgcggcagtccgacggctctccgggctcgcggatgtcgtgatcgttgcacggggagga
ggaagctttgaggacctctttcccttcaatcacccggatgttgtcagggcaatcgcctcc
tgcccggtcccggtggtcagcgccatcggccacgaggtggatgtcacgctcgccgacctt
gccgcggacgtcagggcgccgacgccttcagcagctgccgaactggctgtcccggaccgg
aacaccttacggttgcagctttttgagttgcgtgacctgatgggctctgccctcatcggt
aggctggcatgggcaaaggaagagatatccggtctccgtgaccggctccggcctcgtagg
ttggcacagaagatcgaagaacggcagcagtttgccgccgaccttgcggaacggcttgaa
cgggcatgttccacccggctcgaacgggaacgcctcgtcctggcaggaatgcgggtggca
ctcgacagccacaatccttccgccgtgctttcccgcgggtattgtgttgcagagaaagac
gggactattgtaaagagcaccggaaggcttgcagagaaggaccggctccggctccggttt
tatgacggcagcagccaggtgatcgtggagcgtgtacaccatgacggaaacgtatga
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