Methanoregula formicica: Metfor_1620
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Entry
Metfor_1620 CDS
T02392
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mfo
Methanoregula formicica
Pathway
mfo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Metfor_1620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfo03019
]
Metfor_1620
03009 Ribosome biogenesis [BR:
mfo03009
]
Metfor_1620
04131 Membrane trafficking [BR:
mfo04131
]
Metfor_1620
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mfo04147
]
Metfor_1620
Messenger RNA biogenesis [BR:
mfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Metfor_1620
Ribosome biogenesis [BR:
mfo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Metfor_1620
Membrane trafficking [BR:
mfo04131
]
SNARE
SNARE associated proteins
Others
Metfor_1620
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Metfor_1620
Exosome [BR:
mfo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Metfor_1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_2
AAA_16
TIP49
AAA_5
AAA_14
AAA_22
AAA_33
AAA_28
nSTAND3
Mg_chelatase
RNA_helicase
AAA_7
NPHP3_N
Parvo_NS1
IstB_IS21
Sigma54_activat
Zeta_toxin
AAA_17
DUF815
AAA_18
AAA_24
ABC_tran
AAA_3
ATPase_2
NB-ARC
PhoH
ATPase
SLFN-g3_helicase
bpMoxR
DUF5906
AAA_19
Bac_DnaA
AAA_lid_PRS2_C
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AGB02650
UniProt:
L0HF73
LinkDB
All DBs
Position
complement(1571124..1573514)
Genome browser
AA seq
796 aa
AA seq
DB search
MTDKDYYDVTVKEAAHDDAGRGIARLSIEVMKKIGLVSGDVIEIQGKKKAAAIVWPGFAQ
DTGFGILRIDGNIRGNAGTGIDEKVRIRKSEAEYAKKIVVQPTQPIRLVGGEQYLSRVLR
GRPVIEGQAVRVDAIGNSITLVITKVAPKGMVIVTDDTEIELKEEAYKPEEGKKEVSDIH
YEDIGGLGRELQLVREMIELPLRHPEIFERLGIQPPKGVLLYGPPGTGKTLIAKAVANEV
DAHFITLSGPEIMSKYYGESEKGLREKFEEAEQNSPAIIFIDEIDAIAPKRAEVQGEVER
RVVAQLLALMDGLKGRGQVIVIAATNLPDSIDPALRRGGRFDREIEIGIPDKKGRMEIFQ
VHSRGVPLAEDVKIEEFANTTHGFVGADIALLVKEAAMHALRKIIPQIKIDEDIPAEVLD
ALRVTNEDFAEARKHVEPSAMREVLVEVPDITWQQVGGLEDVKQELREAVEWPLKFPDVF
ERLQTKPPKGILMFGPPGTGKTLLAKAVANESECNFIAVKGPELLSKWVGESEKGVREIF
RKARQASPSIIFFDEIDALVPKRGSYQGSSHVTESVVSQILTELDGMEELKNVTVLAATN
RPDMLDDALLRPGRLERHIYVPAPDEESRKKIFEVYLGGETGSILAKDVAIDELVKQTEG
YVGADIEALVREAKMAAMRDFIVQMGDRTEQERKDAIKNVMLTRAHFDAALLKVKGSLDA
ETLEKSERQAWEMLYNQEQRTALDKASMLLSRAGMAHKKADEKLAAELRTAVYARKKDFG
EIKKLTESLEKKLEKA
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaggattattacgatgttacggtgaaggaagcagcccacgacgacgccggg
cgcggcattgcacgactgagtatcgaggtgatgaagaagatcggtctcgtctccggtgac
gtgatcgagatccaagggaagaagaaggccgctgccattgtctggccgggtttcgcccag
gataccggctttggcatcctccgcatcgatggcaatatccgagggaatgcagggaccggt
atcgacgagaaagtcaggatcaggaagtcggaggcagaatatgcgaagaagatcgttgtc
cagcctacccagccgatccgtctcgtcgggggtgagcagtacctttcaagggtgctccgc
gggcggccggtgatcgaaggccaggccgtccgcgttgacgcgatcgggaactccatcacg
ctggtcatcacgaaggtggcccccaagggcatggtcatcgttaccgatgacaccgagatc
gagctcaaggaagaggcctacaagcccgaagagggcaagaaggaagtctccgacatccat
tacgaggatatcggcggccttggccgcgagctccagctggtccgcgagatgattgagttg
ccgctgcgtcacccggagatcttcgagcgcctggggatccagcctcccaagggtgtgctg
ctctacgggccgcccggcaccggcaagaccctgatcgcaaaagccgttgcaaatgaagtc
gatgcccacttcattacgctctccggcccggagatcatgagcaagtattacggcgagagt
gagaagggcctgcgcgagaagttcgaggaagctgagcagaactcccccgcgatcatcttc
atcgatgagattgacgcgatcgctccgaagcgtgctgaagtccagggagaggtggagcgg
cgtgtcgttgcccagctcctggcgctcatggacgggctcaagggccgtggccaggtcatc
gtcattgcagcaaccaaccttccggactccatcgaccccgcgttacggcgtggcggccgg
ttcgaccgggagatcgagatcggcatcccggacaagaaaggccggatggagatcttccag
gtacacagccgcggtgttccccttgccgaagacgtaaagatcgaggagttcgccaacacc
acccacggctttgtcggcgccgatatcgccctgctcgtcaaggaagctgcgatgcatgcg
ctccggaagatcatcccccagatcaagatcgacgaggatatcccggcagaggtactggat
gcactgcgggtcaccaacgaggactttgcagaagcccggaaacatgttgagccatcggcc
atgcgcgaggtgctggtagaagtacccgatatcacctggcagcaggtgggcggtcttgag
gatgtgaagcaggagctgcgggaggctgtcgagtggccgctgaagttccccgatgtcttc
gaacggctccagaccaagccgccgaagggtatcctcatgttcgggccgcccggcaccggc
aagacactgctcgcaaaggccgtggcaaacgagagcgagtgcaactttattgccgtgaag
ggccccgagctcctctcgaaatgggtcggcgaatcggagaagggcgtgcgggagatcttc
cggaaggcccggcaggcatccccgtcgatcatcttcttcgatgagatcgatgccttggtc
cccaagcgcggtagctatcagggctcctctcacgtgaccgagagcgttgtatcccagata
ctgaccgagctcgacggcatggaggagctcaagaacgtcaccgtgcttgcggctaccaac
cggccggacatgctggatgatgccctgctccggccgggccggctcgagcggcatatctat
gtgcccgctcctgatgaagagagcaggaagaagatcttcgaggtctaccttggaggagaa
actggcagcatccttgcaaaggacgttgcgatcgatgaactcgtgaaacagaccgagggc
tatgtcggtgccgatatcgaggcgctggtccgcgaggccaagatggccgctatgcgtgac
ttcatcgtccagatgggcgaccggaccgagcaggagcggaaggacgcaatcaagaacgtg
atgctcacccgggcacacttcgatgccgcgctcctgaaggtgaaaggatcgcttgacgca
gagaccctggagaagtccgaacggcaggcatgggagatgctctacaaccaggagcagcgc
acagccctcgacaaggcctcaatgctgttgtcccgggccgggatggctcacaagaaggcc
gacgagaaacttgccgcagagctccgaacggccgtgtatgcacggaagaaggactttggc
gagatcaagaaactcacagaatcgctggaaaagaaactggagaaagcgtaa
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