KEGG   Methanoregula formicica: Metfor_1620
Entry
Metfor_1620       CDS       T02392                                 
Name
(GenBank) AAA family ATPase, CDC48 subfamily
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mfo  Methanoregula formicica
Pathway
mfo04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mfo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    Metfor_1620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mfo03019]
    Metfor_1620
   03009 Ribosome biogenesis [BR:mfo03009]
    Metfor_1620
   04131 Membrane trafficking [BR:mfo04131]
    Metfor_1620
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mfo04147]
    Metfor_1620
Messenger RNA biogenesis [BR:mfo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Metfor_1620
Ribosome biogenesis [BR:mfo03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    Metfor_1620
Membrane trafficking [BR:mfo04131]
 SNARE
  SNARE associated proteins
   Others
    Metfor_1620
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    Metfor_1620
Exosome [BR:mfo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Metfor_1620
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_2 AAA_16 TIP49 AAA_5 AAA_14 AAA_22 AAA_33 AAA_28 nSTAND3 Mg_chelatase RNA_helicase AAA_7 NPHP3_N Parvo_NS1 IstB_IS21 Sigma54_activat Zeta_toxin AAA_17 DUF815 AAA_18 AAA_24 ABC_tran AAA_3 ATPase_2 NB-ARC PhoH ATPase SLFN-g3_helicase bpMoxR DUF5906 AAA_19 Bac_DnaA AAA_lid_PRS2_C Viral_helicase1
Other DBs
NCBI-ProteinID: AGB02650
UniProt: L0HF73
LinkDB
Position
complement(1571124..1573514)
AA seq 796 aa
MTDKDYYDVTVKEAAHDDAGRGIARLSIEVMKKIGLVSGDVIEIQGKKKAAAIVWPGFAQ
DTGFGILRIDGNIRGNAGTGIDEKVRIRKSEAEYAKKIVVQPTQPIRLVGGEQYLSRVLR
GRPVIEGQAVRVDAIGNSITLVITKVAPKGMVIVTDDTEIELKEEAYKPEEGKKEVSDIH
YEDIGGLGRELQLVREMIELPLRHPEIFERLGIQPPKGVLLYGPPGTGKTLIAKAVANEV
DAHFITLSGPEIMSKYYGESEKGLREKFEEAEQNSPAIIFIDEIDAIAPKRAEVQGEVER
RVVAQLLALMDGLKGRGQVIVIAATNLPDSIDPALRRGGRFDREIEIGIPDKKGRMEIFQ
VHSRGVPLAEDVKIEEFANTTHGFVGADIALLVKEAAMHALRKIIPQIKIDEDIPAEVLD
ALRVTNEDFAEARKHVEPSAMREVLVEVPDITWQQVGGLEDVKQELREAVEWPLKFPDVF
ERLQTKPPKGILMFGPPGTGKTLLAKAVANESECNFIAVKGPELLSKWVGESEKGVREIF
RKARQASPSIIFFDEIDALVPKRGSYQGSSHVTESVVSQILTELDGMEELKNVTVLAATN
RPDMLDDALLRPGRLERHIYVPAPDEESRKKIFEVYLGGETGSILAKDVAIDELVKQTEG
YVGADIEALVREAKMAAMRDFIVQMGDRTEQERKDAIKNVMLTRAHFDAALLKVKGSLDA
ETLEKSERQAWEMLYNQEQRTALDKASMLLSRAGMAHKKADEKLAAELRTAVYARKKDFG
EIKKLTESLEKKLEKA
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgacagataaggattattacgatgttacggtgaaggaagcagcccacgacgacgccggg
cgcggcattgcacgactgagtatcgaggtgatgaagaagatcggtctcgtctccggtgac
gtgatcgagatccaagggaagaagaaggccgctgccattgtctggccgggtttcgcccag
gataccggctttggcatcctccgcatcgatggcaatatccgagggaatgcagggaccggt
atcgacgagaaagtcaggatcaggaagtcggaggcagaatatgcgaagaagatcgttgtc
cagcctacccagccgatccgtctcgtcgggggtgagcagtacctttcaagggtgctccgc
gggcggccggtgatcgaaggccaggccgtccgcgttgacgcgatcgggaactccatcacg
ctggtcatcacgaaggtggcccccaagggcatggtcatcgttaccgatgacaccgagatc
gagctcaaggaagaggcctacaagcccgaagagggcaagaaggaagtctccgacatccat
tacgaggatatcggcggccttggccgcgagctccagctggtccgcgagatgattgagttg
ccgctgcgtcacccggagatcttcgagcgcctggggatccagcctcccaagggtgtgctg
ctctacgggccgcccggcaccggcaagaccctgatcgcaaaagccgttgcaaatgaagtc
gatgcccacttcattacgctctccggcccggagatcatgagcaagtattacggcgagagt
gagaagggcctgcgcgagaagttcgaggaagctgagcagaactcccccgcgatcatcttc
atcgatgagattgacgcgatcgctccgaagcgtgctgaagtccagggagaggtggagcgg
cgtgtcgttgcccagctcctggcgctcatggacgggctcaagggccgtggccaggtcatc
gtcattgcagcaaccaaccttccggactccatcgaccccgcgttacggcgtggcggccgg
ttcgaccgggagatcgagatcggcatcccggacaagaaaggccggatggagatcttccag
gtacacagccgcggtgttccccttgccgaagacgtaaagatcgaggagttcgccaacacc
acccacggctttgtcggcgccgatatcgccctgctcgtcaaggaagctgcgatgcatgcg
ctccggaagatcatcccccagatcaagatcgacgaggatatcccggcagaggtactggat
gcactgcgggtcaccaacgaggactttgcagaagcccggaaacatgttgagccatcggcc
atgcgcgaggtgctggtagaagtacccgatatcacctggcagcaggtgggcggtcttgag
gatgtgaagcaggagctgcgggaggctgtcgagtggccgctgaagttccccgatgtcttc
gaacggctccagaccaagccgccgaagggtatcctcatgttcgggccgcccggcaccggc
aagacactgctcgcaaaggccgtggcaaacgagagcgagtgcaactttattgccgtgaag
ggccccgagctcctctcgaaatgggtcggcgaatcggagaagggcgtgcgggagatcttc
cggaaggcccggcaggcatccccgtcgatcatcttcttcgatgagatcgatgccttggtc
cccaagcgcggtagctatcagggctcctctcacgtgaccgagagcgttgtatcccagata
ctgaccgagctcgacggcatggaggagctcaagaacgtcaccgtgcttgcggctaccaac
cggccggacatgctggatgatgccctgctccggccgggccggctcgagcggcatatctat
gtgcccgctcctgatgaagagagcaggaagaagatcttcgaggtctaccttggaggagaa
actggcagcatccttgcaaaggacgttgcgatcgatgaactcgtgaaacagaccgagggc
tatgtcggtgccgatatcgaggcgctggtccgcgaggccaagatggccgctatgcgtgac
ttcatcgtccagatgggcgaccggaccgagcaggagcggaaggacgcaatcaagaacgtg
atgctcacccgggcacacttcgatgccgcgctcctgaaggtgaaaggatcgcttgacgca
gagaccctggagaagtccgaacggcaggcatgggagatgctctacaaccaggagcagcgc
acagccctcgacaaggcctcaatgctgttgtcccgggccgggatggctcacaagaaggcc
gacgagaaacttgccgcagagctccgaacggccgtgtatgcacggaagaaggactttggc
gagatcaagaaactcacagaatcgctggaaaagaaactggagaaagcgtaa

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