Methanoregula formicica: Metfor_2157
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Entry
Metfor_2157 CDS
T02392
Name
(GenBank) DNA helicase, Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mfo
Methanoregula formicica
Pathway
mfo03022
Basal transcription factors
mfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Metfor_2157
09124 Replication and repair
03420 Nucleotide excision repair
Metfor_2157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfo03021
]
Metfor_2157
03036 Chromosome and associated proteins [BR:
mfo03036
]
Metfor_2157
03400 DNA repair and recombination proteins [BR:
mfo03400
]
Metfor_2157
Enzymes [BR:
mfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Metfor_2157
Transcription machinery [BR:
mfo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Metfor_2157
Chromosome and associated proteins [BR:
mfo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Metfor_2157
DNA repair and recombination proteins [BR:
mfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Metfor_2157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
AAA_22
DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGB03163
UniProt:
L0HIP5
LinkDB
All DBs
Position
2115063..2117072
Genome browser
AA seq
669 aa
AA seq
DB search
MNSIDTFFPYSEYRPGQRHMLEVAATVARDGGIAMIDAPTGSGKSSVVASLLAERKGRKV
VIAVRTVSQLTTFIRELELVKKKAPQIKTVYLVGKKSMCPLGGEGDVYRRCEGVKAFSTS
LMRDRAEKGAMIPAKDPFIIQQIRRMDREHPLLCPYYINSKMFVPAEGVGVRMVPSTELR
NKADRVIQNPVPPRDLTEYSSGLCPYELMMHAAKNTNVVILNYHHLFDRQIREQLYANLG
VEEQDILLLIDEAHNCGDVITGIESVTMEERDLEQASRELSGMARRHKGAEAVRHVLPRL
TEFIRGLQNSVEAEDWFDPAIFDRMIVRESLYKDMDEIVDDLMGLSETIREKNQKSGEFR
ETAIERLTEFLLRLSNSATDPAFLTVYRKEESGITLEVRSIDPAASLSEVCGSHACAILI
SGTLSPVESFRKYYFGNGNVTTLSLPNAFPKENRLIVCANDITTAYSMRQNKENTNRIAG
YIRSFSSLKGNRAIYFPSYQILETYADLTARDIRGKKVFIEPRDAAGAGAALTEFLSLPS
RRESGVMFAVAGGKWSEGLDYRGEMMAGAMVIGLPLAPFNRVRKMMIEYYRHKFGPEGEF
LCYTLPAVNRSLQALGRVLRTPEDRGVLVLGEKRFLEKKVKDALPAWIQEEMIACDCDRF
REVLAQWKP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcatcgacaccttcttcccgtacagcgagtaccggcccggccagcgccacatg
ctcgaggtcgcagccacggttgcccgcgatggcggtattgcgatgatcgatgccccgacc
ggctccgggaaatcgagcgtggttgcttcgctccttgccgagcgcaaaggccggaaggtt
gtgattgctgtccgcacggtcagccagctcacgacattcatccgcgagcttgagctcgtg
aagaagaaagccccgcagatcaaaaccgtgtatctcgttggcaagaagagcatgtgccca
ctgggtggggaaggcgacgtataccggcgctgcgaaggggtcaaggcattcagtacctcg
ctgatgcgggaccgggccgagaaaggggcgatgattccggcaaaggatccgttcatcatc
cagcagatccgcaggatggacagggaacacccgcttctctgcccctattatatcaacagc
aagatgttcgttcccgctgaaggcgttggagtgcggatggttccctcgaccgagctccgt
aacaaagccgaccgcgtgatccaaaacccggtccccccgcgggatctcactgaatactca
tccggcctctgcccgtacgagctgatgatgcatgccgcaaagaacacaaacgtcgttatc
cttaactaccaccatcttttcgaccggcagatccgcgaacaattgtatgcgaacctgggg
gtcgaggaacaggacatcctcctcttaattgacgaagcgcacaactgcggggacgtgatc
accgggatcgagagcgtgaccatggaagaacgggacctcgaacaggcctcgcgcgaactc
tccggcatggcccggcggcacaagggggcagaggcggtccggcatgtgctgccccggctc
acggagttcatccggggcttgcagaattcggtcgaggccgaggactggttcgatcccgcg
atcttcgaccggatgattgtccgcgaatcgctctacaaggatatggacgagatcgtggac
gacctcatgggcctgtcggaaaccatccgcgagaagaaccagaagtcaggggagtttcgc
gaaaccgcgatcgagcggctgacggaattccttcttcggctttcaaactccgcaaccgat
ccggcgttcctcaccgtatatcgtaaagaggagtccggcatcacgctcgaagtccgcagc
atcgatcccgcagcttcgctttctgaagtgtgcggctcccatgcctgcgccatcctgatc
tcaggcacactctcgccggtcgagagcttccggaagtattacttcggcaacggcaacgtg
accacgctctccctccccaatgcattcccgaaggagaaccggctcattgtctgcgcaaac
gacatcaccaccgcgtactcgatgcggcagaacaaggagaacacaaaccgtatcgcagga
tacatacggtctttctcctccctgaaaggcaaccgtgccatctacttccccagttaccag
atcctcgagacctacgcggatttgaccgcacgggatatccggggcaagaaagtcttcatc
gagccccgcgatgctgccggggcaggtgctgccctgactgagttcctctctctcccgtct
aggcgcgaatccggtgttatgtttgccgttgccgggggaaagtggagcgaggggctcgat
taccggggcgagatgatggcaggcgcgatggtgatcggtctcccgctcgccccgttcaac
cgggtgcgcaagatgatgatcgagtattaccggcacaagttcgggcccgagggggagttc
ctctgctacaccctgccggccgtcaaccgttcgctccaggcgctcgggcgggtgctgcga
accccggaggaccggggcgtgctggtgctcggggagaaacggtttttggaaaagaaggtc
aaagatgccctgccggcatggatccaggaagagatgatcgcatgcgactgtgaccggttc
cgcgaggtgcttgcgcaatggaaaccatga
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