Methanoregula formicica: Metfor_2552
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Entry
Metfor_2552 CDS
T02392
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mfo
Methanoregula formicica
Brite
KEGG Orthology (KO) [BR:
mfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfo03016
]
Metfor_2552
Enzymes [BR:
mfo01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Metfor_2552
Transfer RNA biogenesis [BR:
mfo03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Metfor_2552
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
AGB03545
UniProt:
L0HHN4
LinkDB
All DBs
Position
complement(2498724..2499734)
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AA seq
336 aa
AA seq
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MKAIFDGSIIRTGREGRPLYEQSGYGRPEGDGLRLSPQEALYLLHRQKIEVPGYSFDTLF
AEFSDQPTVMRSFLVYRDLRERGYVVQTGPHDFRVFRRGEKPGKGESLYLVRVLSERDPI
LFELLIEEVIASRNMRKQYILAVVDDEQELTYYEIKLQKLADASCTLPDLTPTDAMLTGK
SAMVRVTADSSLEKAGFGKRLDPERLMLAPVELLYLMDRGTIRLMRGDAGMSFAEYLALA
SESDSELTLKHTVYTELRRHGFTPRTGYKFGHHFRVYCGTSVHSDLLVHAVEKEAALPMS
VISRSVRMAHSVKKKMLFGAVHSSGIQFVEFARIKL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcgatattcgacggatccatcatccgcaccgggcgggaaggccgccctctctac
gagcagagcgggtacggcaggccggagggagacggtctccggctctccccccaggaggcc
ctgtatcttctccatcgccagaagatcgaagtgcccgggtactcgtttgacaccctcttt
gccgagttctccgatcagcccacggtcatgcggagttttctcgtgtaccgcgatctgcgg
gaacggggttacgtggtccagaccgggccgcatgacttccgggtcttccggcggggggaa
aagcccggtaaaggcgagtcgctctatcttgtccgagtgctctccgagcgtgacccgatc
ctgttcgaactcctgatcgaggaagtgatcgcctcgcgcaatatgcgcaaacagtacatc
cttgccgtcgttgacgacgaacaggagctgacctattacgagatcaagctccagaaactg
gcagatgcgtcctgtacgctgccggatctcaccccaacggatgcaatgctgaccggcaaa
tcggcaatggtcagggtaacggcagattcaagccttgagaaggccgggttcggcaagcgg
cttgacccggagcggctcatgctcgctcccgttgaactcctctaccttatggaccgggga
acaatccggctcatgcggggggatgcggggatgagttttgccgagtaccttgctctcgca
agcgagagcgacagcgagctcaccctgaaacataccgtgtacaccgagctgcgccgccac
gggttcacgccccggacgggatacaaattcgggcaccacttccgtgtctactgcgggact
tccgtccattccgacctgctcgtccatgccgtggagaaggaagccgctcttcccatgagt
gttatctcccgttccgtgcggatggcccacagtgtcaaaaagaagatgttgtttggcgct
gtacattcttcaggaatccagttcgtcgaattcgcacggatcaagctgtga
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