Marinomonas foliarum: JSY38_01360
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Entry
JSY38_01360 CDS
T07165
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JSY38_01360 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfoi03400
]
JSY38_01360 (sbcB)
Enzymes [BR:
mfoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JSY38_01360 (sbcB)
DNA repair and recombination proteins [BR:
mfoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JSY38_01360 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JSY38_01360 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JSY38_01360 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
HD-CE
PucR
Motif
Other DBs
NCBI-ProteinID:
QRV24214
LinkDB
All DBs
Position
complement(280281..281735)
Genome browser
AA seq
484 aa
AA seq
DB search
MTSSGPTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPE
ACLLTGISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFID
PYAREWQNNCSRWDIIDLVRMTYAMRPDGIVWPKGEDGQVSMKLEALTKANDIAHEQAHD
ALSDVYGTIEIAKLIRQKQPKLFNYYLKMRQKHELQQFIDVARLKPFLHISGMFGQAKHY
SSFVVPIAPHPTNKNGVIVFDLMADAQPLIDLSVEEIRHRVFTRQEELGDVERLPLKVIH
YNKSPAVAPATFLKDADVVKRLALDGAICRHNLAIIKGQAGLAAKLSDVFVQEDRPIHKD
PDVMLYSGGFFSREDKVRMEKIRSTPADQLSGLAISFDDRRLPEMLMRYIGRNYPDQLTE
QQQFEWEEYRQVRLLEKDGGGSINMEQYFDRLNHIAQLPDLSQSKQIMLQDLADYAQSIY
PIPL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcatcgggccccacttcatttttttggtttgattttgagacaaccggaacggac
ccagcgcgagatcgccccatgcaatttgcgggtattagaacggatcttgattttaacccc
attggcgagcctatcatgttttactgtcgcctggcggaagatgtgcttcctcagccagaa
gcgtgtttgctgactggaatcagccctcaagatgcgaatagagaaggcttatgtgaagct
gaatttatgcaagcagtagaagctgagctttcgcaacctggtacttgcgctctgggatac
aataccattcgttttgatgacgaagtggttcgttatggcttttatcgtaatttcattgac
ccttatgcgagagagtggcagaacaattgttctcgctgggacattattgatttggtccgt
atgacgtatgcgatgcgcccagacggcattgtttggccaaaaggcgaggatggtcaagtt
tctatgaaacttgaagcattaaccaaggctaatgatattgcgcatgagcaagctcatgac
gccttatcagatgtctatgggacgattgaaatcgctaagctgattcgtcaaaagcaaccc
aaattattcaattattatttaaaaatgcgtcaaaagcatgagttgcaacaatttatcgat
gttgcgcgattaaagccttttttacatatttctggcatgttcggtcaagcaaaacattat
tcctcttttgttgtgcctattgctccgcatcctactaataagaacggtgtgatcgtattt
gatctgatggccgatgctcagcctctgattgacttgagtgtagaagagattcgtcatcgc
gtatttacacgacaagaggagttaggtgacgttgagaggcttccccttaaagttattcat
tacaacaagtctcctgccgtggctccagcgacttttttgaaagatgccgatgtggttaag
cgcctcgccttggatggtgcgatttgtcgtcataatcttgccatcataaaagggcaagct
ggtctagcagctaagctgagtgatgtctttgttcaggaagatcgaccaatacataaagac
ccagatgttatgttgtattctggaggctttttttcacgagaagataaagtcagaatggag
aaaattcgttctactccggctgatcagttatcagggctggcaatatcgtttgatgatcgc
cgtttacctgaaatgttaatgcgttatattggaaggaattaccccgatcaactaacagaa
cagcaacagttcgaatgggaagagtatcgacaagttcgcttgcttgaaaaagatggtggt
ggttctattaatatggagcagtatttcgatcgcttgaaccacattgctcaactgccagat
ttgtctcaatcgaaacagataatgcttcaagacctagcggattacgctcaaagcatttac
ccaatacctctataa
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