Marinomonas foliarum: JSY38_09060
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Entry
JSY38_09060 CDS
T07165
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03420
Nucleotide excision repair
mfoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JSY38_09060 (uvrD)
03430 Mismatch repair
JSY38_09060 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfoi03400
]
JSY38_09060 (uvrD)
Enzymes [BR:
mfoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JSY38_09060 (uvrD)
DNA repair and recombination proteins [BR:
mfoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JSY38_09060 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JSY38_09060 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QRV25633
LinkDB
All DBs
Position
complement(1958550..1960763)
Genome browser
AA seq
737 aa
AA seq
DB search
MDVSFILDSLNDKQREAVAAPLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAV
TFTNKAAREMQGRIEQLVGVPPQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQL
RLIKRIMRELNIDDTRWPPKQVSWFINAQKDEGRRAAHVPDSHDPFSKGMRELYYHYEEA
CERGGLLDFGELLLRAHELMLSTPALLRHYQDRFRHVLVDEFQDTNTIQYAWLRIMVGSE
GTITAVGDDDQSIYGWRGAKIENIQNFTKDFKDVGTIRLEQNYRSTGHILNAANGLIKHN
DDRLGKELWTDSGEGDPISLYAGFNEQDEARFILGIIKQWRDKGTSLTDMAILYRSNAQS
RVIEECLVREQIAYRIYGGHRFYDRLEIKNALAYARLALDPNDDGAMERVINVPPRGIGE
RSIGTLREIARDNGCSMWQAAQEVVRQSLMTARATNAIKAFLHLIEGLSTTVQQPDLNLN
DIFEQIIEEAGLIPFHEKEKGEKGEARIENLKELVGAAGGFSWSDEDEEFSSPLMAFLDK
AVLDAGDAQADEYQDAVQLMTLHSAKGLEFPLVFLTGVEENVFPSKMSFEEPGRLEEERR
LCYVGITRAMEKLYITYAESRRLFGSESFNSPSRFIKELPQECLEEVRLRSQVSRPVSLQ
RPDYNFEKNKLQNSRTLNNYKEPEVTVNMGDRVNHPVFGEGLVINYEGQGPQARVQVNFD
DEGTKWLVLSFAKLEVL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttatcctcgattcactgaatgacaagcagcgtgaagccgttgccgca
cctttacagaatagccttgttctggcgggggcgggatcaggtaaaacccgagtcttagtg
caccgtattgcatggttaatgcatgcttatgaactgtcgccttacagcctgatggcagtg
acttttaccaacaaagcggctcgtgagatgcaaggtcgtatagaacaactggtgggagtg
cctcctcaaggtatgtgggttggtacttttcacggtttagcgcatcgtttattgcgcgcc
cattggcgcgatgcgggactaaaagaaaacttccagataatggacagtgacgaccaatta
cgattaatcaaacgcattatgcgtgaactcaatatcgacgacacgcgctggccgcctaag
caagtgtcttggtttattaacgcgcaaaaagacgaaggccgccgagcagcccatgtgcca
gacagtcatgatcctttttccaaaggcatgcgtgagctgtattaccattatgaagaagct
tgtgaacgtggtggattattggacttcggcgaattgctgcttcgtgctcatgagctgatg
ctcagcacgccagcgttattgcgtcattatcaagatcgttttcgtcatgtgctggtggac
gagtttcaagataccaacaccattcaatacgcgtggttacgtatcatggtcggcagtgaa
ggcacgattaccgccgtgggcgatgatgaccagtcaatttacggctggcgtggcgcgaaa
attgaaaatattcaaaacttcaccaaagattttaaagacgttggcaccatccgattggag
caaaactatcgctcaactggtcatattttgaacgccgccaacggcttgatcaaacacaat
gatgatcgcctagggaaagagctttggaccgacagcggtgaaggcgatccaatttctctc
tatgcgggatttaacgaacaagacgaagcgcgctttattcttggcattatcaaacaatgg
cgtgacaagggaacgtctctgacggacatggcgattttgtatcgctctaatgctcagtct
cgagttattgaggaatgccttgttagggaacagattgcttatcgaatttatggtggacac
aggttctacgatcgtcttgagatcaaaaatgctttggcttatgcccgtttggcattggat
ccgaatgacgatggcgcgatggaacgagttatcaacgtaccgcctcgtggtattggtgaa
cgcagtattggtaccttgcgtgaaattgcacgagataatggctgttctatgtggcaagcc
gcgcaggaagtggtacgtcagtccttaatgacagcgcgagcaacgaatgccattaaagca
tttttacatctaatcgaaggcttgagcacgaccgttcagcaacccgatttgaacttgaac
gatatttttgaacaaattattgaagaagcaggcttgattcctttccatgaaaaagaaaaa
ggcgagaaaggcgaagcgcgaatcgaaaacttaaaggagttggttggtgcggctggcgga
ttcagctggagcgacgaggacgaagagtttagttctccgttgatggcgttcttggacaaa
gcggtattggacgcgggcgatgcgcaagcggacgagtaccaagatgcagtgcagttgatg
acattacattcggcgaaaggactggagtttccactggtattcttaacgggcgtggaagaa
aacgtttttccaagcaagatgtcttttgaagagccgggtcgtctcgaagaagaacgtcga
ctttgctatgtgggtattactcgggcgatggaaaagctttacatcacctacgcggaatcg
cgtcgtttgtttggtagtgaatcgtttaacagcccttcgcgctttatcaaagagttaccg
caggaatgcttggaagaagtacgtcttcgctcacaagtcagccgtcctgtgtctttgcaa
cgtcctgattacaactttgaaaagaacaaactacaaaacagccgcaccttgaacaattac
aaagagccagaagtcacggtaaacatgggcgatcgagtgaatcatccggtgtttggtgaa
ggcttagtgatcaactatgaaggccaaggcccgcaagcccgcgttcaggttaacttcgac
gatgaaggcaccaaatggctcgtgttgtcgtttgctaaattggaagttttgtag
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