Marinomonas foliarum: JSY38_10105
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Entry
JSY38_10105 CDS
T07165
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSY38_10105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoi03019
]
JSY38_10105
Enzymes [BR:
mfoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JSY38_10105
Messenger RNA biogenesis [BR:
mfoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JSY38_10105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
P-loop_SecA
CMS1
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QRV22440
UniProt:
A0ABX7IJD1
LinkDB
All DBs
Position
complement(2188758..2190008)
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AA seq
416 aa
AA seq
DB search
MSFASLGLHQDILLQVQNLGYPTPTPIQQAAIPAVLAKKDLMAGAQTGTGKTAAFALPLL
HQILTTESNDNPLGIQVLVLTPTRELAQQVHASFEKYSANTLIKSVVAYGGASINVQLDA
LRNGCQVLVATPGRLLELIMKNLIDLSDLKSLVLDEADRMLDMGFIIDIQRILKKLPETR
QTLFFSATFNDEIFALSKTLLKDPQLIEVDNRNTTASKVEQTIYAVDKNRKSALISYLIG
SKNWQQVLIFTRTKQGADELAKEMQKDGIATQSIHGDKSQGARDRVLTDFKNGKVRALVA
TDVAARGIDIDQLQYVINHELPYNAEDYIHRIGRTGRAGATGIAISLITEKERYLLTDIE
KMLDEQFIPQWLSGFEPDLNIIDNSAKRREPSKKELRAKALGFSSSTDKKPKRKRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcttcattaggacttcaccaagacattcttctacaagtacaaaaccttggt
tacccaaccccaacacctattcaacaagcagctattccagctgtgctagctaaaaaagat
ctgatggcaggtgcacaaacaggtacggggaaaactgctgcattcgctttgcctcttttg
caccagattcttacgacagaatcaaatgataaccctcttggtattcaagtccttgtactc
actccaactcgcgagcttgctcaacaagttcatgcaagttttgagaaatacagtgctaat
actcttattaaatcagtagttgcttatggtggcgccagtattaatgtccaactagatgca
cttagaaatggctgccaagtactggtcgcaacacctggtcgcctgcttgaattgataatg
aaaaatctaattgatttaagtgacctgaaatcactggtactcgacgaagccgaccgaatg
ctggacatgggctttatcatcgacatccaaagaatattaaaaaaactacctgaaaccaga
caaacacttttcttttcagccacttttaatgacgaaattttcgcgttaagcaaaacactt
ttaaaagatcctcaactcatcgaagtagacaatcgaaataccacagcatctaaagttgaa
caaaccatctatgccgttgataaaaaccgtaagagtgcgcttatttcatacttgatcggc
tcaaagaactggcaacaggtacttatttttacacgcaccaaacaaggagcagatgaacta
gcaaaagagatgcaaaaagatggaatagcgacccaatctatccatggagataaatcccaa
ggcgcaagagatagagtattaactgactttaaaaatggcaaagttcgtgctcttgtggcc
accgatgtagctgcaaggggtattgatatcgatcagttgcaatacgttattaatcacgag
ttgccctacaatgccgaagattatattcaccgtataggacgtacggggcgagcaggcgca
acaggtattgccatcagtttgatcactgaaaaagagcgctatctattaaccgatattgaa
aagatgctcgatgagcagttcatcccccaatggctttcgggctttgagcctgaccttaat
attattgataactcagcaaaacgacgtgaaccctccaaaaaagaattaagagccaaagcg
ctcggtttttcctcatcaacagataaaaagccgaaaagaaagcgacgctaa
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