Marinomonas foliarum: JSY38_15040
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Entry
JSY38_15040 CDS
T07165
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JSY38_15040 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfoi03400
]
JSY38_15040 (recD)
Enzymes [BR:
mfoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JSY38_15040 (recD)
DNA repair and recombination proteins [BR:
mfoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JSY38_15040 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
SH3_13
NAT10_TcmA_helicase
AAA_11
AAA_22
UvrD-helicase
UvrD_C
AAA_16
AAA_17
ADK
AAA_28
nSTAND_NTPase5
AAA
nSTAND3
SLFN-g3_helicase
CbiA
Motif
Other DBs
NCBI-ProteinID:
QRV23353
UniProt:
A0ABX7ILZ8
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All DBs
Position
3228730..3230664
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AA seq
644 aa
AA seq
DB search
MDFSNQLGLLDSLNETRLEENSPVSTPFSLSTWQAKGVLRAIDCQWVEQLAQHAKEGRPD
EKNSAVHIAGALCSAYLGAGHICIDLATIWQSPPEGVELDELRTALHHSGVNSVSAWCES
LQASRLVSSATNLSERPMVLAGTRLYLYRYFQYEQQVLNYLKGQFSVAPFAVDAGLLAQL
FPNQSDTVDWQKVAVANAASLPFSVISGGPGTGKTTTVTRLLALLVAQSLAEGKLLRIEL
AAPTGKAAARLTESISKAKTDLPLSDDIKLAIPEQASTLHRLLGSDFGRSRFKHNKENPL
HLDVLLVDEVSMVDLPMMAKLIDAMPPHARLILLGDKDQLASVEAGSVLGDLSYGIEEVY
FQPEWAGRLAHLTGENLAPYGNPSAPPMSRALTLLRTSYRFDANSGIGHLAKAMNAGDSS
AVLRCLESNYTDVEWRVPEDGQSKADIATLAKGYDDYWDAVRQNLDIAKLYEMFSRYQIL
TAVRQGEFGVEKVNAQLEQYFYQRGRVKDPHVWYPGKAVMLTRNDAALGLFNGDIGLCMP
DEFQRLRVWFMQPDGTFTGLLPSRLSEFEVVFAMTVHKSQGSEFDQVALLLPLKPSPVLT
KELLYTGITRAKKSFSLWGSSGLIRAASSARIQRDSGLIGELWH
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggacttttctaatcagctaggtttgcttgactctcttaatgaaacaaggctcgaggaa
aactcccctgtatccacgccattcagtttgtctacttggcaagccaagggcgtgttaaga
gcgattgattgccagtgggttgagcagctggcgcaacatgccaaagagggcaggccagat
gaaaaaaatagcgcggttcatatcgctggcgctttgtgcagtgcgtatcttggcgcaggg
catatttgtatcgatctagcgaccatttggcaaagtccgccagaaggtgtggagttagac
gagttacgaacggcattacatcatagcggcgtaaacagtgtttctgcttggtgcgaatct
ctgcaagcaagtcgtctggtgtcttctgcgacaaatttatctgaacggccaatggtgttg
gcaggcacgcgtttgtatttgtatcgttattttcaatatgaacaacaggtgctgaattat
cttaaaggtcaattttctgttgcgccttttgctgtcgacgccggtttgttagcacaactt
ttccccaaccaatccgatacggtggattggcaaaaagtcgcggtcgccaatgcggcaagc
ttgcctttctccgtaatcagcggtggccccggaacaggcaagacaaccactgtgactcgc
ttgttggctttgctggtggctcagtcactcgctgaaggaaagttgttacgtatcgagctg
gccgcaccaaccggtaaagcggcggcgcgattgacagagtccatttcaaaagccaagacg
gatttgccattaagcgatgacattaaacttgctattccagaacaagccagcactttgcat
cgcttattaggcagtgactttgggcgcagtcgatttaagcacaataaagaaaatcctttg
catttggatgtgttgctggtggacgaagtgtccatggtggatttgcccatgatggcaaag
ttgattgatgccatgccaccacacgctcgactcattttattaggcgataaagatcaactc
gcttcggtggaagcgggtagtgtgttaggggatttatcttatggtatcgaagaggtgtac
tttcaaccagaatgggcaggtcgcctcgctcatctaaccggagaaaatctggcgccgtat
ggtaatccgtcggcaccgccaatgagtcgcgcgttaaccttattgcgtaccagttatcgc
tttgatgcgaatagcggcatcggacacttagcaaaagccatgaacgctggtgacagctct
gccgtgttgcgttgccttgagtctaattacaccgatgtagagtggcgagtaccggaagat
ggacagagcaaagccgatattgcgaccttggcaaaaggctatgatgactactgggacgca
gtacgtcagaatttagacatcgctaagctgtatgagatgttttcgcgctaccaaattttg
accgcggttcgtcaaggcgagtttggtgtcgagaaagtgaacgctcaactcgaacagtat
ttctaccaacgaggacgagtgaaagacccccatgtttggtatccgggaaaagcggtgatg
ctgacgagaaatgatgcggcattaggcttgtttaacggcgatattggtctttgtatgcct
gatgagtttcagcgtcttcgtgtctggttcatgcaacctgatggcacattcacggggctg
ctgccgagtcgtttgagtgaatttgaagtggtgtttgccatgacggtacataaatcccaa
ggctctgagttcgatcaagtcgctttgttgttgcctttaaaaccttctccagttttgacc
aaagagctgctttatacagggattactcgggcgaaaaagtcttttagtttatggggctca
agtggattaattcgggcggcaagcagtgcgcgtattcagcgggattctggtcttatcgga
gagctttggcattga
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