Marinomonas foliarum: JSY38_16080
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Entry
JSY38_16080 CDS
T07165
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
mfoi
Marinomonas foliarum
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfoi03021
]
JSY38_16080 (rapA)
Transcription machinery [BR:
mfoi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JSY38_16080 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Helicase_C
SNF2-rel_dom
Tudor_1_RapA
ResIII
DEAD
RIH_assoc
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QRV23533
LinkDB
All DBs
Position
complement(3471006..3473834)
Genome browser
AA seq
942 aa
AA seq
DB search
MYQTGQRWSSRNEPDLGVGMIVDTQNKSFTLHFPDAEADRQYSNDQTSLVRRTLTVGDQL
HFQDETYTVLEVEEIDDLIEYRINDDDDWLEESIIQFPRNDKNELDSLLALSPARRMWFD
LRRHTLEHQAANAASPVRGLMGLKAELLPHQIYLAHDIANRPKARALLCDEVGMGKTLEA
GLILHQRLLNGLCKRVLILTPTNLQHQWLVEMLRRFHQPFSLINESVYEDFMEGDDNPFE
QQPFVISPIDWASQHPKATQHMLDAEWDMVIVDEAHHLAWHPETPSIGYQVVARLAAQTE
SLLLLSATPEQTGEREHFSRLQLLDADHYHDFDHYLAQQREFKKAAELAESLLPFSQENS
SPEALDWKAAFGSYLAEVSAKDWFQDLTTKSGAEQTAAAKEAISWLIDRHGTGREMFRNT
RAAVGGFPDRYLHSYPLENNEHFESANRHIQPETEVSDGLWEKDPRWVWLKEFLECQADK
VLVICHSADMAQWLNDQLTFAGFQSADFHEQMPLIHRDRAAAYFADEDGAQILVCSEIGS
EGRNFQFSHHIVMYDLPEHPDLLEQRIGRLDRLGQLNDVQIHVPYIKQSVQERLFHWYHH
ALNAFCRTTGSGDKVEEAFGDSLHAYLHGQDDDTDLLKEANIYHEALLKQMEEGRNRLLE
MSSCRPEQARALIDQINNQATKGLHHYIEQVTHAFNIYADCMNDDPDRAAWFLRPSTDMM
LEALPGIEEEGKMLMLDRRQASQREDVAFATWEHPLITMLMDEVQGFDSGKLTSAILPIA
ALPEGTVLVESMFVIEATAHPRLKLAQSLPMTPMWQLSDSNGKFLHQQFTADKWAEKLKG
VPNRVAEQWVAALRKNLIEVLQAHQLNAQDQARPIVHAAKTSYQHRCQNEIERLVELKAF
NNTIRDEDIERLETNMQEGLTRIDEHQIRLDAIRIILTTKPE
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaactggacaaagatggagtagccgcaacgagcctgatctcggcgtaggcatg
atagtagacacacaaaacaagtcttttaccctgcacttcccggatgcggaagcggatcgt
caatactcaaatgaccagaccagtcttgttcgacgcacactaaccgtcggtgaccaactt
catttccaagacgaaacctacacggtattggaagtagaagaaattgacgacctgatcgaa
tatcgtatcaatgacgacgatgattggttagaagaatccatcattcaatttccacgtaac
gacaagaacgagcttgattctttattggcactgtcgcccgctcgtcgcatgtggttcgac
ctacgtcgccatacacttgaacaccaagcagccaatgcagcatcgccagtacgcggctta
atgggcttgaaagcagaacttctgccacaccagatttaccttgctcacgacatagccaat
cgtccaaaagcacgtgcacttttgtgtgacgaagttgggatgggtaaaaccttagaagca
ggtttgatcttgcatcagcgcctactcaacggactctgtaagcgcgtacttattctgaca
ccaaccaacttgcaacatcagtggttggttgagatgttacgccgcttccatcagcctttc
tcactgatcaacgaatctgtctacgaagacttcatggaaggcgacgacaatccttttgag
cagcagccattcgtaatttcaccaatcgactgggcaagccagcacccgaaagcgacccaa
cacatgttagacgctgaatgggacatggttattgttgacgaagcacatcacctcgcttgg
cacccagaaacaccgagcattggctaccaagtggttgctcgtttagccgcacaaacagag
tctctattgctattgagtgcaacgccagaacaaacgggcgagcgtgaacatttctctcgc
ctacagcttttagatgccgatcattaccatgacttcgaccactacctagctcagcaaaga
gaatttaaaaaagccgctgaactggctgaatctttattgccatttagccaagaaaacagc
tcacctgaagcattggactggaaagcggcatttggctcgtacctcgctgaagtgagcgcc
aaagactggttccaagatctaaccaccaaatctggcgcagaacaaaccgctgccgcgaaa
gaagccattagctggttgattgaccgtcacggaacaggccgtgaaatgttccgtaataca
cgggcggctgtgggtggtttccctgatcgttaccttcattcttacccattagaaaacaat
gaacacttcgaatctgccaatcgtcacatacaaccagaaaccgaagtatccgatggcttg
tgggaaaaagatcctcgctgggtttggcttaaggaattcctagaatgccaagcggacaaa
gtcctagtaatttgtcacagtgcagacatggcacagtggctaaatgaccaactgactttt
gctggtttccaaagcgccgatttccatgagcaaatgccacttatccaccgagatcgtgca
gcggcttatttcgcagacgaagacggtgcgcaaattttggtatgttctgaaatcggcagt
gaaggccgtaacttccagttcagccatcacatcgtcatgtacgacctgcctgagcaccct
gatttactagaacagcgcattggtcgccttgatcgtctagggcaactaaacgacgtacaa
atccacgtgccatacatcaaacaaagtgtacaagagcgcttgttccactggtatcaccac
gccctaaatgccttctgccgcactaccggttctggtgacaaagttgaagaagcttttggt
gacagcttacacgcttaccttcatggtcaagatgatgacactgatcttcttaaagaagcc
aacatatatcacgaagcgctgctaaaacagatggaagaaggccgtaatcgcctgctagaa
atgagctcatgccgtccagaacaagcccgtgcgttaatcgatcagattaacaaccaagca
acaaaaggcctgcaccattatatcgagcaagtcactcacgcctttaacatctatgcagac
tgcatgaatgatgaccctgatcgtgcagcttggttcttgcgcccttctaccgacatgatg
ctagaagccctgccaggcattgaggaagaaggtaaaatgctcatgcttgatcgccgtcaa
gccagccaacgtgaagacgtggcgttcgcaacttgggaacacccacttataacaatgctt
atggacgaagtccaaggctttgactctggcaagctgacttcggctatcttaccaatcgca
gcattgcctgaaggcacggtattggtagaaagtatgttcgtcatcgaagcgaccgctcac
ccgcgtttgaaattggcgcaatctctgccaatgacaccaatgtggcaattgtctgactcc
aatggcaaattcctccatcagcaatttactgccgataaatgggcagaaaaactgaaaggc
gtgccaaaccgagtcgcggaacaatgggttgctgcattgcgaaagaaccttattgaagtt
cttcaggcgcaccagttaaatgctcaagaccaagcgcgtccgatcgttcacgcagcgaaa
acgtcttaccaacatcgctgtcagaatgaaatcgaacgtctagtggagttaaaagccttc
aacaacaccattcgtgacgaagacattgaacgccttgaaaccaacatgcaggaaggtttg
actcgtatcgacgaacaccaaatccgcttggatgcgattcgtattatcttaacgacgaaa
ccggaataa
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