Marinomonas foliarum: JSY38_17665
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Entry
JSY38_17665 CDS
T07165
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mfoi
Marinomonas foliarum
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoi03019
]
JSY38_17665 (hrpA)
Enzymes [BR:
mfoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JSY38_17665 (hrpA)
Messenger RNA biogenesis [BR:
mfoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JSY38_17665 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
nSTAND3
AAA_22
SRP54
ResIII
ABC_tran
T2SSE
PhoH
DUF1465
Myosin_head
NACHT
AAA_23
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-ProteinID:
QRV25831
LinkDB
All DBs
Position
3812757..3816632
Genome browser
AA seq
1291 aa
AA seq
DB search
MPTHAVMTRDRHLISQKQTQLSKRQKEGLPFDRMQTELNTLIEQSETLYQARLSRLPKIT
YDESLPVAARADEIIKAIQENQVVIIAGETGSGKTTQLPKMCLQAGRGIAGQIGHTQPRR
IAARSVAERISDEMQVTLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYD
TIIIDEAHERSLNIDFLLGYLKQVLAARPDLKVIVTSATIDVERFSQHFNNAPIIEVSGR
TYPVEVRYQPLLSKSDSEELDEDQSMEQGVLDAVELLIAEERQSGYRGAGDILVFLPGER
EIRETAEILRRAELRGTEVLPLYARLSASEQQRIFKSHSGRRIVLSTNVAETSLTVPGIR
YVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEDDFNNRS
EFTDPEIFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALNKERLT
PIGRQLAKLPIDPKLGRILIAAEQHSVLKEVAIIVSALSVPDPRERPQDKKTQSDQAHAV
DKDEDSDFAVFLNLWERFEEQRQALSQNQLRQYCRKQFLNFMRMREWRDIHRQVMIACKQ
LGFKEVQHEERHYEAIHRSLLAGMFTQVANKMEDSKEMLGCRSRKLAIFPGSMLFKKPPQ
WIMAAELVETSKLYARVTARIDPAWIEEYAAPFVKRQYFDPHFERNQGRIMAHEQVSLYG
LIIVAKRRIDYGHVNPEEAREIFIRSGLVEGELRTKQAFYRKNKALIDSLETQEAKLRKR
DILVDDETVFAFYNARLPDHVRNLKSLEHFVKTSPDVLLMTRDDLINQDVSVDDHAFPDS
FGLNGVALPIDYKFDPGQEADGATLKVPVGLLRQLSLEDLGWAVPGFIKERCEALLRALP
KALRRRFVPIPQFVDRVYPNLSKDKGDLLEQLSLQIKRETLIDIPLNEWNADKLDSHLTL
NLEVVDERGKVLGVGKNLAQLQTQFSDLVEESFAKFGTKQHEQEGLTAWPDQDIPERQEI
KQAGIKVTAFPALVAQGESVSLKMYDDKNTAVETHRKGVITLLKLTLSKDMRYLQKNLPH
LRESMLIFSPLGQKETLLEDLLNAVLDKVFLDGRALPRTRQEFESCITAHKPRLISVAND
MAEQLYRVLSSYQGVAKKMKGNIPLPWTRVYGDIKVQLAQLIYPGFIGNTPLFWLGQLPR
YFKGIEVRLERFQNHLNKENASVSELEALWLKYTQQKKAHEDKALYDPELVKYRWMLEEY
RISLFAQSVGTLEPISEKRLAKQWGEVKKLV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgccgacacatgccgtaatgacgcgcgatcgtcatctgataagtcaaaaacaaacacag
ttgagcaagcgtcaaaaggaaggtttaccttttgaccgtatgcaaacggaactaaatact
ctcattgagcagtctgagaccctttatcaagctcgtttgtctcgcttgccaaagattact
tacgatgagagtctgccggttgcggctcgcgctgacgagatcatcaaagccatacaagaa
aaccaagtggtgattattgcaggggaaaccggttccggtaaaaccacgcaattgccaaaa
atgtgtctgcaagctggccgtggcatagcggggcaaataggacatacgcaaccgcgacgt
attgccgcacgtagcgttgctgagcgtatcagtgatgagatgcaggtaaccttgggtgag
caagttggttttcaggtacgttttagtgacgaaagcaacgaagaaaccctcattaagctg
atgaccgacggtattttgttggctgaaattcagcaagataaacgcctgtataaatacgac
accatcatcatagatgaagcccatgaacgtagcttaaatatcgactttttgttgggttat
ttaaagcaggtgttagcagctcgtcccgatcttaaggttattgtaacttcggctacgatc
gacgtggagcgcttttcccagcattttaataatgcgcctattattgaggtgtctggtcgt
acctatcctgtagaagtacgttatcagcctttgctgagcaagtccgattcggaagaacta
gacgaagaccaaagcatggagcaaggcgttttagacgcagtcgaattgttgatcgcggaa
gagcgtcaatctggctatcgcggtgcgggtgacattctggtgtttttaccgggtgagcga
gaaattcgagaaaccgccgagattcttcgtcgtgctgaattgcgtggcaccgaagtattg
cctttgtatgcacgattgagcgccagtgaacagcagcgcattttcaaatcccattctggt
cgccgtattgtattgtcgaccaacgtcgcagaaacctcgttaacggttccgggtattcgt
tatgttattgacccgggtttagcgcgaattagccgttacagtgtgcgctccaaagttcag
caactaccaatagaaaaaatcagccaagccagcgccaatcagagagcagggcgatgtggt
cgtgtggcagatggtatttgtattcgtctgtacgacgaggacgattttaataatcgttct
gagtttaccgacccagagattttcagaactaacttggcgtcggtaattttgcagatggcc
aacttgaagcttggcgctgttgagaagtttccttttgttgaaatgcctgaaaaacgcatg
atcaacgatggttatcgtgctttgacggagctgggggcgctgaataaagagcgcctaacg
ccgattggtcgtcagttggctaagttgccaattgacccgaaattaggtcgtatcttaatt
gcggctgaacaacatagcgtactcaaagaagtggctattattgttagtgcgctatctgtt
ccagatcctcgtgagcgtccgcaagacaagaaaacgcaatccgaccaagctcatgctgtc
gataaagacgaagattctgattttgctgtatttttgaatttgtgggagcgctttgaagag
cagcgtcaagccttatcgcagaatcaattgcgtcaatattgccgtaagcagtttttgaat
ttcatgcgcatgcgcgagtggcgtgatattcatcgccaagtaatgattgcctgtaaacag
cttggttttaaagaagtacagcatgaagaacgtcattatgaagcgattcatcgctcattg
ttggccggtatgtttactcaggtcgctaataagatggaagacagcaaagaaatgctcggc
tgtcgttctcgcaaattggcgattttcccaggttccatgttattcaaaaaaccacctcaa
tggattatggcggcggagctggttgagaccagtaaactgtatgcgcgagtcaccgcccgt
attgaccctgcttggattgaagaatatgcagcaccgtttgtaaaacgccaatactttgat
ccgcatttcgagcgtaaccaaggccgtatcatggcccatgagcaagtctcgctttatggt
ctgattattgttgcgaagcgtcgtattgattacggtcatgtgaatcctgaagaagcccgc
gagatctttatccgttcagggctagtggaaggtgagttacgcaccaaacaggccttttat
cgtaagaacaaagccttgattgattcgttagaaacccaagaggccaagctgcgtaagcgt
gatattttggtcgacgatgaaaccgtgtttgctttttataatgcacgattgcctgatcat
gtacgtaatttaaaaagcctagaacattttgtgaaaacctcgcccgatgtcttgctgatg
acgcgtgatgatttgatcaatcaggatgtgagtgtggatgatcatgcttttccagattct
tttggtctgaacggtgttgcgctacctattgattacaagttcgatcctggccaagaagcc
gatggtgcgacattaaaagtccccgttggtttgttgcgtcagttgagtttagaagattta
ggttgggcggttcctggttttatcaaagaacgctgtgaggctttactgcgcgcgttgcca
aaagcgttacgtcgtcgttttgtgccgattccgcagtttgttgatcgcgtatacccaaat
ttgtcgaaagacaaaggggatttgctagagcagcttagcttgcagattaaacgtgaaacc
ttgattgatattccacttaatgaatggaatgccgacaagctggattctcacttaactttg
aatctagaggtggtggacgagcgcggcaaagtacttggtgtgggtaaaaatcttgcacaa
ctccagactcaatttagtgatcttgtggaagaaagctttgccaaattcggtacaaagcaa
catgagcaagaaggcttaaccgcatggccagatcaagatattccagaacgccaagaaatt
aagcaagcgggtatcaaggttacagcgtttcctgcactagtggctcaaggggaaagtgtc
tccttgaaaatgtatgacgataaaaacacagctgtcgaaacgcatcgtaaaggtgtgatt
actttgctcaaactcaccttgagcaaagacatgcgctatttgcagaaaaacttaccgcac
ttaagagagtccatgctgattttttcgccattaggccaaaaagaaacactgctcgaagat
ttgcttaatgccgttttggataaagtgtttttagatggacgagctttgccacgaactcga
caagaatttgagtcttgtattacagcccataaaccacgtttaatcagcgtagcgaatgac
atggcggaacagctttatcgtgtgttgtcgtcttatcagggggtggctaaaaagatgaaa
ggtaatattcctcttccttggacgcgggtttatggcgatatcaaggtgcagttagctcag
ctgatttatccaggattcattggtaatacgccgttgttttggctgggacagttgccgcgt
tacttcaaaggtattgaagtgcgcttggaacgctttcaaaaccatttgaacaaagaaaac
gcctcggtgtctgagttagaagcactttggttgaaatacacgcaacagaaaaaagcccat
gaagataaggcgctctatgacccagaattagttaaatatcgctggatgttagaggaatac
cgtatttccttgtttgcgcaatctgttggtacgctagaacctatctctgaaaagcgctta
gcaaagcaatggggtgaggttaaaaaactggtttag
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