Marinomonas foliarum: JSY38_18460
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Entry
JSY38_18460 CDS
T07165
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mfoi
Marinomonas foliarum
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfoi03032
]
JSY38_18460 (topA)
03400 DNA repair and recombination proteins [BR:
mfoi03400
]
JSY38_18460 (topA)
Enzymes [BR:
mfoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JSY38_18460 (topA)
DNA replication proteins [BR:
mfoi03032
]
Prokaryotic type
DNA Topoisomerases
JSY38_18460 (topA)
DNA repair and recombination proteins [BR:
mfoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JSY38_18460 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Ribosomal_L10
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QRV23967
LinkDB
All DBs
Position
3990630..3993260
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTGTTATSTPQERAKQAALTRKM
SPEEKLAYKSKKSRTQLISRMGVDPESNWKAHYEILPGKEKVVDELKRLAKNADTIYLAT
DLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIKAAFETPSELDMNRVNAQQARRF
LDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREKEIRAFVPDEFWELDAMLATPS
KDVIKFEAAKYQNKEYRPVNKTQSDEHVARLNDAKYLVSSREDKPTSSKPSAPFITSTLQ
QAASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSVDAVEALRGYISSTFGDAYLPA
DPIRYSSKEGAQEAHEAIRPSDVTVRVDDLLGMEKDAHRLYDLIRSQFMACQMTPAEYTS
TTITVTTGEYEFKAKGRILRFDGYTRAMQTVAKKGEDNILPDVGQGEYLTLKELLPEQHF
TKPVARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGDIVTERL
VDSFNSLMNFSFTAQMEEQLDNIAEGNKDWIKTLNAFYKDFSSVLAKAESPDGGMMLNEP
TPTDIECPTCSRPMQIRTASTGVFMSCSGYALPPKERCKATINLVRGDEAVAIDDEEGES
KALINKHRCKICGSAMDSYLMDEGRKLHVCGNNPACSGYEVETGTFKIKGYDGPTLECDK
CSSEMQLKTGRFGKYFGCTNEECKNTRKLLKSGEAAPPKMDPVPMPDLACQKVEDHYVLR
DGATGLFLAASQFPRKRETRAPLVKELLPYMDQIDPKYHFFAKAPVKDSEGRPSIIRYSR
KTKEQYVMTENEEGKPTGWKAFFVGSKWVIEEGKKK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcactggttatcgtggaatcgcctgctaaggcgaaaaccatcaataaatac
ttgggtaatgactttgttgtcaaatctagtgtagggcacattcgagacttacctacaggt
acaacagctacctctacacctcaagagcgtgcaaagcaggccgctttgacgagaaaaatg
agcccagaagaaaagctcgcctataaaagtaaaaagtctcgtacgcaattgatttcaaga
atgggagttgacccagaaagtaattggaaagctcactacgaaattttgccaggcaaagaa
aaagttgtcgatgaattaaaacgcttagcaaaaaatgctgacaccatctatctcgcgacc
gatttggatagagagggtgaggcaattgcatggcacttgcgtgaagcaattggcggtgat
gatagccgttataagcgagtggtctttaatgagattactaaaaaggcgattaaggcggcg
tttgaaacgccatctgaactagatatgaatcgcgtgaatgctcaacaggctcgtcgtttc
ttagaccgagtggttggctttatggtttcgccgttactttggtctaaagtagcaagaggc
ttgtctgcaggccgggttcaatccgttgcagtgcgtttaatcgttgagcgtgaaaaagag
attcgtgcatttgttcctgatgaattttgggaattggatgccatgctggctacgccttca
aaagacgttattaagtttgaagcggcaaaatatcaaaataaagaatatcgtcctgttaac
aagactcaatcggatgagcatgttgctcgtttaaatgatgccaaatacctcgttagcagt
cgagaagataaaccaaccagcagtaagccgtctgcaccgtttatcacctctacgttacag
caggcagcaagtacacgcttgggctatggtgttaagaagacaatgatgcttgctcagcgt
ctgtatgaaggtggttatatcacttacatgcgtacagactcgactaatttaagtgtcgat
gctgtagaggctcttagaggctatatttcttctacttttggtgatgcttatttgccagct
gatcctattcgttatagcagtaaagagggtgctcaagaggctcatgaggcaattcgtcct
tctgatgtcactgtacgggttgatgacctgcttggcatggaaaaagacgcgcatcgcttg
tacgacttgatccgtagtcagtttatggcttgtcaaatgacaccagcggaatacacctct
actacgatcacagtaacgacaggtgagtatgagttcaaagcaaaaggccgcattctgcgt
tttgatggttacactcgtgctatgcagacggttgctaaaaagggtgaagataatattttg
ccggacgtaggtcagggtgaatatcttacgcttaaagaattattacctgaacaacatttt
actaagcctgtggcgcgctttagcgaagcgagcttggttaaagagcttgaaaaacgtggt
attggtcgaccttctacatatgcatctattatttctacgattcaagatcgtggttatgtg
cgagttgagaatcgtcgcttctatgcagaaaaaatgggcgacatcgttacagaacgccta
gttgatagttttaattccttgatgaacttcagctttacagcgcaaatggaagaacaacta
gacaatatcgcagaaggtaataaagattggataaagacgcttaatgcgttttataaagac
tttagctctgttcttgccaaagcagaatcgcctgatggcggcatgatgctaaatgagcca
actccaacagacattgaatgcccaacctgttctcgtccgatgcaaattcgtacggcgagt
accggcgtatttatgtcttgttctggctatgcgcttccacccaaagagcgctgtaaagca
acgattaaccttgttcgtggtgacgaagctgttgctattgatgatgaggaaggtgaatct
aaggcattgataaataagcatcgctgtaagatttgtggatcggcgatggacagctactta
atggatgaaggtcgtaagttacatgtttgtggtaacaacccagcttgttctggttatgaa
gtagaaaccggaacctttaaaataaaaggttacgatggtccaacacttgaatgtgacaaa
tgtagctccgaaatgcagcttaaaacgggtcgctttggtaaatactttggctgtacaaac
gaggagtgtaaaaacactcgtaagctattgaaaagcggtgaagctgcgccaccgaagatg
gatcctgtgccaatgcctgatcttgcctgtcaaaaagtggaagaccactatgtgctccgc
gatggtgcaacgggtttatttcttgctgctagtcagttccctcgtaagcgagaaacaaga
gcgcctttggtaaaagaactgcttccttatatggatcaaattgaccctaaataccatttc
tttgctaaagcgccagtaaaggactcagaaggtcgcccatccattattcgctatagccgc
aagacaaaagagcaatatgtcatgacggaaaacgaagagggcaaaccaactggttggaag
gctttttttgtcggctctaaatgggtgatcgaggaaggtaagaaaaaatga
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