Microaceticoccus formicicus: VZL98_02220
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Entry
VZL98_02220 CDS
T11006
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfom Microaceticoccus formicicus
Pathway
mfom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VZL98_02220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfom03400
]
VZL98_02220 (mfd)
Enzymes [BR:
mfom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VZL98_02220 (mfd)
DNA repair and recombination proteins [BR:
mfom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VZL98_02220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
IstB_IS21
RecG_dom3_C
PEPCK_N
Motif
Other DBs
NCBI-ProteinID:
WVH63789
LinkDB
All DBs
Position
456380..459889
Genome browser
AA seq
1169 aa
AA seq
DB search
MNYLTDGLKNLNEFSEILEKLNRGKSSIYLHGMVRESLPHFVYALQHELEKSIFVVVEDE
LRAKEIYESALGLPGIDIKFYPKSEIAFYNIKPLESSADMQRIEIMNKLLSDDKCIVITS
VEALKKKISTPKFFKSTTLYIKTSDDIEIDELTHKLTTMQYERVEIVESRGQYAIRGGII
DIYPIDMQNPVRIELFDTEVDSIRIFSINNQRSIENIDGFKITPAREFLLTEKDKSNIIA
GIEKDIEKTENSFVYGFDKQQLIDKFTEIKAMVESDLILSNPDLVMPYIKKNSYASILDY
IDKESTIIFEDLARVYDRASDIEQRFSEDMTYQLEKGEVFGSHEKIAYSFTELLKQIKEY
STINITQLKKRTRLLNPEAEFKITTVETQVYNRNFSLFVSDLKQLAYAGYKTVIMAQSQE
KAMGLVELLNTEDISANYMEEIDSEIKSSQIYITPFTISKGFEYKNLKMIFITHNEIYGK
SHVKATKKRYKKMSGQDIVSYSDLVSGDYVVHENHGIGIYKGIEQIKVSDKLKDYFIVEY
RGTDKLFIPTDQMNLIQKYIGGENRAPKLNKLGAPEWTKTKQRAKKALSEIADDLIEIYA
RRMKEKGYAFSPDTHWQREFEDSFIYEETSAQLRSISEIKEDMELEKPMERLLCGDVGYG
KTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYHTAIERFKEFPVNVEMISRFRTAGQQK
AILKDVSNGNIDLIIGTHRLLSKDLQFKSLGLLIIDEEQRFGVRHKDKLKELRQNIDVLM
LSATPIPRTLQMGLVGIRDMSLLDEAPEERYPTTTYVLEYEPMIIREAIIKEIERGGQIY
FVYNRVYDIDEMAFKIQELVPEASIVTAHGRMSERMLENVMIDFTNGEYDILLSTSIIET
GLDIHNVNTMIIYNADYMGLSQLYQLKGRIGRGERTSYAYFTYEKGKSLSEISEKRLKAI
RDFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIDQIGYDLYVKFLEQAIKHAKGEEMDI
RDREVNIDLGIDSYIPSNYIPSSSDKIEIYKRIANISTLEELEDMFDELIDRFGDIPNPV
LNVIYISLLKSMAQIIGFIQISGGDEYLKFEYEDVNLFNLEEFEFLTGRFESKLELGFTT
PPSITIKTGKDRLKAGYELMSAIMDIKKQ
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaactacctaactgatggattaaaaaacttaaatgaattcagtgaaatactggaaaaa
ttaaatagaggaaaaagctcgatctacctgcatggcatggttagggagagcctccctcat
tttgtctatgctcttcaacatgaactagagaagagcatttttgtcgtggttgaagacgaa
ttaagagcaaaggaaatctatgaatcggcactcgggttgcccggtatcgatatcaaattc
tacccaaaatcggagatagctttttacaatatcaagcctcttgaaagtagcgcggacatg
cagaggattgagataatgaataaactcttgtccgatgataaatgcatagtaatcacctca
gtggaagcattaaaaaagaaaatctcaactccgaaattctttaaaagtaccaccttgtac
attaaaacttctgacgatatcgaaatagatgaactgactcacaaacttacaaccatgcag
tatgaaagagttgaaatagttgaatccaggggacagtatgctatcagaggaggaataata
gatatatatcctatagacatgcaaaaccccgtcagaattgaattattcgatactgaagta
gattctattagaatctttagcattaacaaccaaagatcgatagaaaatatcgatggattt
aaaataactcctgcaagagaatttctattaactgaaaaggacaaatccaatataattgca
ggtatagaaaaagatatagaaaaaacagagaacagctttgtatatggattcgataaacag
cagctaattgataaatttacagagataaaagcgatggttgaaagtgaccttatactttca
aacccggatctcgtaatgccgtatataaagaagaattcctatgcatccatattggactat
atagataaggaaagtaccataatatttgaggatctggccagagtctatgacagagcatcg
gatatagagcagagatttagtgaagatatgacataccaacttgaaaagggagaagtattt
ggttctcatgagaaaatagcatatagttttactgagcttttaaagcagataaaagaatac
tctaccataaatattacgcagctaaaaaagagaacgagacttttaaatcctgaagcggaa
tttaaaatcacaacggtggagactcaggtttacaatagaaacttttcgttattcgtatcg
gacttaaaacagctcgcatatgcaggttataaaaccgtaataatggctcaaagtcaggaa
aaagccatgggtttggtagaacttttaaatactgaagatatctctgcaaactatatggaa
gagattgattcagaaataaagagctctcaaatctatatcacgccctttacgatcagcaag
ggctttgaatataaaaacttgaaaatgatatttattacccataatgaaatctatgggaaa
tctcatgtcaaagccaccaagaaaaggtataagaagatgtcgggtcaggacatagtatct
tattctgacctggtcagcggagattatgtagtacatgaaaatcacggaattggtatctac
aaaggaatagagcaaataaaagtatccgataaacttaaagactattttatcgtagagtat
agagggactgataaattatttatacctacagaccaaatgaatctaatccaaaagtatatc
ggtggtgaaaacagggcacccaaactaaataaactcggtgcacctgagtggacaaagact
aagcagagagcaaaaaaagcactttctgaaatcgcggatgatttgatagaaatatatgcc
agacgaatgaaagaaaaaggttatgcattttcaccggatactcattggcaaagggagttt
gaagattccttcatatatgaagaaacctcggcgcagcttaggagtatctccgaaataaag
gaagacatggaacttgaaaaacctatggaaagacttctttgcggggatgtaggatatggt
aagacggaagttgcattaagagctgcctttaaagcgattatggatggcaaacaggtcgca
ttcctagtgccaaccactatacttgctcagcagcactatcacaccgcaattgagagattt
aaagaatttccggtaaatgtcgaaatgatttcaagatttagaacagcaggacaacaaaaa
gcaatattaaaagatgtttctaacggcaatatagaccttataatcgggacacatagacta
ttgtcaaaggacttacagtttaaatcacttggacttttgataatagatgaggaacagaga
tttggagtaagacacaaggacaaattaaaagaacttagacaaaacatagatgtactcatg
ctaagcgcaacacccataccgagaacactgcagatgggattggtggggataagggatatg
agtctactggatgaagcaccggaagagagatatcctacgactacctatgtcctcgaatat
gagcctatgataataagagaagccataataaaagaaattgaaagaggcgggcagatatac
ttcgtctacaatagagtctacgatatagatgagatggcctttaaaatacaagaactcgtc
cctgaagcgagtatcgtaacggcacatggcagaatgagtgaaagaatgcttgaaaatgtc
atgatcgactttacaaatggagagtacgatatacttttatctacatcaattattgaaacc
ggactggatatccataatgtcaacacaatgataatatataatgctgattacatgggtcta
tcgcaactatatcaattaaaaggcaggataggtagaggtgaaagaacttcgtatgcatac
tttacatacgaaaaaggtaaatcactgagcgaaatctcagaaaagagactaaaagcaata
agagactttactgaattcggatccggattcaaaatagccatgagggatttagaacttaga
ggagccggcaatcttttgggagagagccaacatggacatatagaccagataggatatgat
ctatatgtgaaattccttgaacaagccatcaagcatgcaaaaggagaggaaatggatata
agagatagagaggtcaacatagaccttggaatagactcatatatcccaagcaattatata
ccatcgagttcagataagatagaaatctataagaggattgcgaatatttcaactcttgaa
gaacttgaagatatgtttgatgaacttatcgacagatttggagatataccaaatcctgta
ttaaatgtaatatatatctcattgcttaaatccatggcacaaatcatcggatttatacaa
atctccggaggagatgaatatttgaaatttgaatatgaagatgtaaatctatttaatctc
gaagaattcgaattcttgacaggaagatttgaaagtaaacttgaactaggatttactacc
cctccatccatcacgataaaaaccggtaaagatagattaaaagcggggtatgagcttatg
tcggcgataatggatataaaaaaacaataa
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