Microaceticoccus formicicus: VZL98_03325
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Entry
VZL98_03325 CDS
T11006
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfom Microaceticoccus formicicus
Pathway
mfom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VZL98_03325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfom03021
]
VZL98_03325 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfom03400
]
VZL98_03325 (rpoC)
Enzymes [BR:
mfom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VZL98_03325 (rpoC)
Transcription machinery [BR:
mfom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VZL98_03325 (rpoC)
DNA repair and recombination proteins [BR:
mfom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VZL98_03325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WVH64000
LinkDB
All DBs
Position
719444..723178
Genome browser
AA seq
1244 aa
AA seq
DB search
MLELNTFDSIRIGLASPEKIREWSKGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
NCGKYKRIRYKGVVCEKCGVEVTKAKVRRERMGHIELATPVSHIWYFKGIPSRMGLLLDM
SPRALEKILYFASYVVTDPGDTDLFTKQLLSEFEYNEAYDKWGESFKVGMGAEVIKELLL
DIDLEKESEELKEALMNSTGQKKVRLSRRLEVVESFRQSGNRPEWMIMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGSPEIIIRNEKRMLQESVDALIDNGR
RGKAVTGPGNRNLKSLSDMLKGKTGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MAMELFKPFVMNQLVEDEIAPNIKSAKKMVERSSPKVWDILEKVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLACTAYNADFDGDQMAVHLPLSTEAQAEARLLMMSTNNIL
APKDGKPIATPSQDMVLGAFYLTTQKDGALGTGKVFNDFNEMYKAHYDKKVSLHATVKVR
VKHGSDDKGELVESTVGRFIFNEGIPQDLGFINRDKDKYALEINKQVNKKALGEIVDKCF
RKHGNIITAKVLDYIKSMGYKYSTIGALSISMSDVTVPEDKFSILDKADVEVRKYENMLK
RGLVLEDERYERVIEIWERATDEVTETLLSNLDPDNNIAIMANSGARGSEKQIRQLAGMR
GLMSSAAGKTIEVPIKANFREGLSVQEFFISTHGSRKGLSDTALRTADSGYLTRRLVDVS
QDVIVRIDDCGTNKYILAKDILEGEEDVIVDSSIIGKILYADVKDGNKTLFTKNQAITEQ
MVSELEEKEIPTIKIWGVSDTLKQQIIGRYAFEDILNPDTGEIIVYKNGMITEQIADLIE
EKKIYEVKIRSVLGCKATHGVCAKCYGRNLATGNPVNIGESVGIIAAQSIGEPGTQLTMR
TFHSGGIAGTGITQGLPRVEELFEARKPKGLAFISENEGTVKLIDNKKRIDIAVTSDDGT
EKVYAIPYGSRIKVKDGDQIKAGDILTEGSVNPHDILKIKGVQGVQDYIMREVLNVYRLQ
GVDIDYKHIEVIIKQMLGKVKIHDAGDSYFLPGSLVNLREFEDINEKLEEEGKVPAEGER
TLLGITKASLATDSFLSAASFQETTRVLTDASIKGKEDYLLGLKENVIIGKLIPAGTGMK
RYENIKIDYEGMRDEDATEAVMDEPTAEATDDIVGSIDEEDSEE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaattaaatacttttgattctataagaatcgggctggcatcgcctgaaaaaata
agagaatggtctaaaggtgaggttaaaaaacctgaaactatcaactatagaaccttgaaa
cctgaaaaagaaggtctgttctgtgaaaagatatttggacctacaaaagactgggaatgt
aactgcggtaaatacaagagaatcagatataaaggtgttgtctgtgaaaaatgtggagtt
gaagtaaccaaggcaaaagtaagacgtgagagaatggggcatattgaacttgccacccct
gtttcacatatttggtactttaagggaattccgtccagaatgggactcttactggacatg
agcccgagagctttggaaaagatactctattttgcaagttatgtagtaaccgacccggga
gatactgacttatttacaaaacaattattaagtgaatttgaatataacgaagcatacgac
aaatggggagaatcttttaaggtaggtatgggtgcagaggtaatcaaagaactcttactt
gatatagaccttgaaaaagaatccgaagagctaaaagaagctcttatgaatagtaccgga
cagaagaaagtaagactgtccagaagacttgaagtagttgaatccttcagacagtcagga
aatagacctgagtggatgattatggacgtaatccctgtaattccacctgatttaagacct
atggttcagctggaaggtggtagattcgcaactagtgacttaaacgatctatatagaagg
gttatcaatagaaacaatcgtctaaagagactactcgatatcggatcgcctgaaataatc
attagaaacgaaaagaggatgcttcaagaatctgttgacgcattgatagacaacggaaga
agaggaaaggccgttaccggtcccggaaacagaaatctaaagagtctatccgacatgctg
aaaggtaaaacgggtagatttagacagaacctactaggtaagagggtagattactcaggt
agatcagtaatcgtagtaggtcctgagcttaagttttaccaatgcggtcttcccaagaag
atggccatggaactcttcaagccttttgtaatgaatcaattggttgaagatgagatagct
ccaaatattaaatctgccaagaagatggttgagagatctagtcctaaggtatgggatatt
cttgaaaaagtaataaaagaccatccggtcttattaaaccgtgcgccgactcttcataga
ttgggtattcaagcatttgaacctgtactagttgaaggtaaggcaattaagcttcatcca
ctagcatgtactgcttacaacgcagactttgacggggaccagatggctgttcacttaccg
ctatctaccgaagctcaagctgaagcaagactactgatgatgtctactaataatatcctt
gctcctaaagacggaaagccaattgctactccttctcaggacatggtattgggagccttc
tatttgacaactcaaaaagacggtgctcttggaacaggcaaggtgtttaacgattttaac
gagatgtacaaagctcattacgacaaaaaagtttcacttcatgcaactgtaaaggtcaga
gtaaagcatggtagtgacgataaaggtgagcttgttgagtctacagtaggaagattcatt
ttcaatgagggtattcctcaagatcttggattcatcaatagagataaagataaatatgca
cttgagataaataaacaggttaacaaaaaagctcttggagaaattgtagataagtgcttt
agaaaacatggtaatatcataactgctaaggtactcgactatattaagagtatgggatac
aagtactccacaatcggagcattgtcaatatccatgagtgatgttactgtgcctgaggac
aaattcagtattctcgataaagccgatgtagaagttagaaagtacgagaatatgcttaag
agaggtttggttctagaagacgaaagatacgaaagagttattgaaatctgggaaagagct
acagatgaagtaacagaaacacttctttcaaatctcgatcccgacaataatattgcaatc
atggctaactccggtgcgaggggttccgaaaagcagataagacagcttgccggaatgcgt
ggacttatgtcatcagcagccggaaaaaccatagaggttccaataaaggctaactttaga
gagggactttcagtacaagagttctttatctcaactcacggttcgagaaagggactttca
gatacagcgctaagaacagcagactccggttatttgaccaggagacttgtagatgtatcg
caagatgttattgtaagaatagatgattgtggtacaaataaatatatattggctaaagat
atccttgagggagaagaagatgtaatagttgattcttctattattggaaagattctctat
gccgatgtaaaagatggtaataaaacgctgtttacaaagaatcaagctatcactgaacag
atggtttcagagctggaagaaaaagaaattccaaccattaaaatatggggagtttctgat
acattgaagcagcaaataatcggaagatatgcttttgaggatattttaaatcccgatacc
ggtgagattatcgtctataagaacggtatgattaccgagcaaatcgctgatttaatagaa
gagaagaaaatttacgaagttaagataagatctgttctgggctgtaaggctactcatggc
gtttgtgcaaagtgttatggtagaaatcttgcaaccggaaatcctgtaaatatcggtgag
tcggttggtattattgctgctcagtcaataggtgagccgggtacacagcttacgatgaga
actttccactccggtggtattgccggaactggaataactcaaggtcttccaagggttgaa
gagcttttcgaggctagaaaacctaagggtcttgcctttatatctgaaaatgaaggaaca
gttaaattaatcgataataagaagagaatcgatattgctgtaacttccgatgacggaact
gagaaagtttatgctataccatatggttccagaataaaggttaaagatggagatcaaatt
aaagcaggagatattttgactgaaggttctgtaaatccacatgatatcttaaagataaaa
ggagttcaaggcgttcaggactatataatgagagaagttcttaatgtatataggcttcaa
ggtgttgatatagactataaacatatcgaagttatcatcaagcaaatgctgggcaaggta
aaaatacatgatgcaggtgattcatacttcttacctggatctcttgtaaatctaagagag
tttgaagatataaatgaaaaacttgaagaagagggcaaggttccggctgaaggtgaaaga
acactattaggtataaccaaggcttcactagcaacagattcgttcttgtctgcggcatct
ttccaggaaactacgagagtgcttacagatgcgtctattaaaggtaaagaagattatcta
cttggattgaaagaaaatgttataatcggtaagctaattcctgcaggaacaggtatgaag
cgatatgagaatatcaagatcgattatgaaggaatgcgcgatgaagatgctaccgaggca
gtcatggatgagcctactgccgaagcaactgatgatatcgtaggaagcatagatgaagaa
gattccgaggaataa
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integrated database retrieval system
