Microaceticoccus formicicus: VZL98_06515
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Entry
VZL98_06515 CDS
T11006
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mfom Microaceticoccus formicicus
Brite
KEGG Orthology (KO) [BR:
mfom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mfom03009
]
VZL98_06515 (rlmD)
Enzymes [BR:
mfom01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VZL98_06515 (rlmD)
Ribosome biogenesis [BR:
mfom03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VZL98_06515 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
MTS
Methyltransf_25
PCMT
PabTrmU54_TRAM_dom
Methyltransf_11
N6_N4_Mtase
UPF0020
PrmA
Methyltransf_4
Methyltransf_32
Cas_Cas4
Motif
Other DBs
NCBI-ProteinID:
WVH62356
LinkDB
All DBs
Position
complement(1317308..1318912)
Genome browser
AA seq
534 aa
AA seq
DB search
MNIGERYKVRILDLNRDSDGVSKYDGAVIFIPNALPGDEVEVEITEKKKNYFKGRITELI
STSEDRIRPVCPYAKECSGCSFQELKYTAELELKKNLVKNNLEKMAGIKKDIEILGSPKT
EGYRNKITLKLDENGLLGYFKRGSKDHCPIEDCPIAQTSIRNIIPKIQKVILKHKEIFDA
KTNNRYPIVELIIRTNKNDELMIITGSKVPNFYGSDSLYSELKSLPRVVSVYQRDEVYQK
RRFKEYKYVLKHGDKKLKYYLGNLEFEVSPESFTQVNNTMTEVLYAKALEFIKREHSEYL
LDLFCGIGTTTCFFSSGSVNLYGIEITKKAIKDAEMNAKRNGLDNILFKAADANRDTMDI
IHNKKPDTVVLDPPRAGIDKMLIENLITSTTKRIIYISCDPATLSRDIKLLTDGGFAIEE
IVGVDMFPRTMHVESVALLSKLDVDQHIKVKLDMDELDITASESKATYEEIKDYVLKKND
MKVSNLYISQIKRKCGLEVGKNYNVSKKENPIVPNCPPEKEEEIREALEHFKMI
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgaatataggagagagatacaaagttagaatacttgatctcaatcgtgactctgacggc
gtatccaagtatgatggcgccgttattttcatacccaatgcacttccaggagatgaagtg
gaagtggagatcaccgaaaaaaagaaaaattactttaaaggcagaattactgaactgatt
agcacatcagaagacaggataagacctgtatgtccttatgcgaaagaatgctcaggttgt
tcttttcaagagcttaaatacactgcagaactggaacttaagaagaatttagtcaaaaac
aatcttgagaagatggcaggaataaaaaaagatattgaaatactaggttctcctaaaacg
gaaggatatagaaataaaataacattaaaacttgatgagaatggtttattgggatacttc
aaaagaggatctaaagatcactgcccaattgaggattgtccaattgctcaaacatctata
agaaacataataccaaagattcaaaaagtcattttaaaacataaagagatatttgatgca
aagacgaataatagatatccaatcgtagagctgataataagaacaaataaaaatgatgaa
ttgatgataattacaggctctaaagttcctaacttttatggatcagattcattatatagt
gaattaaagagtcttcctagagttgtttcagtttatcagagagatgaagtatatcaaaaa
aggagatttaaagagtataagtatgttttaaaacatggagataaaaagctgaaatattac
ttaggcaatttagaatttgaagtatcgccggaatcttttacacaagtcaacaatacaatg
acagaagtactttatgctaaagcactagagtttataaaaagagaacattctgaatacttg
ctagacctattttgcggaataggtacgacaacttgcttcttttcatcaggatctgtgaat
ctatacggaatcgagattacaaaaaaagcaataaaggacgccgaaatgaatgctaagaga
aatggacttgataatatcctttttaaagcagccgatgccaatagagacactatggatata
atccacaacaaaaagcccgacacggtcgttcttgaccctccacgagccggaatagacaag
atgctgatagaaaatcttatcacatccacaactaagagaatcatctatatttcatgtgat
cctgcaacactatccagagatataaaattattgaccgatggtggatttgcgattgaggag
attgtcggagttgatatgtttccgcggactatgcatgtggagtcagtagcacttttgtcc
aaactagatgtcgaccaacatataaaagtaaaattagatatggacgagctagatattact
gcttctgaaagcaaagcgacctatgaagaaattaaggactatgttttaaagaagaacgat
atgaaggtttctaatttgtatatctcacagattaaaagaaaatgtggcttggaagttggc
aaaaactataatgtatctaaaaaagaaaatccaattgttccaaattgtccacctgaaaag
gaagaagagatcagagaggctttagagcattttaaaatgatttaa
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