Microaceticoccus formicicus: VZL98_08670
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Entry
VZL98_08670 CDS
T11006
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfom Microaceticoccus formicicus
Brite
KEGG Orthology (KO) [BR:
mfom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfom03016
]
VZL98_08670
Enzymes [BR:
mfom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VZL98_08670
Transfer RNA biogenesis [BR:
mfom03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VZL98_08670
Prokaryotic type
tRNA splicing ligases
VZL98_08670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF5889
Motif
Other DBs
NCBI-ProteinID:
WVH62767
LinkDB
All DBs
Position
complement(1794919..1796124)
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AA seq
401 aa
AA seq
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MNIISRFIDIKGRYTDAIIFTSDVDRETLSQIENLLDHKMVEGQIVRIMPDCHAGLGCVI
GTTMTISDKVVPNLVGVDIGCGMLTSKLANSNINFEELDSFIRREIPAGFNIRNKVHPNM
RELDIKKLRALRYIDYERAIHSVGTLGGGNHFIEVGKDSNGVLYLVVHTGSRHLGSQVAE
HYQRLAIKTTMENLKEEKEKELLELNPKVNLKKELRRFEKKISGTEKQLMYLENKNMDDY
LHDMKLVQKYASLNRRTITEIIAKGLGLEIRESFETIHNYIDLDEMILRKGAISAKKGEL
VLIPMNMRDGSLFCRGKGNPVWNNSAPHGAGRLMSRKDARDSFKLEDFKNKMEGIYTTSV
SKATLDEDPDAYKPMESIIEAIDDTVEIIDRLIPVYNFKSN
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
gtgaatataatcagtaggtttatcgatattaaaggtaggtatacagatgccattattttt
acaagtgatgtagatcgggagactttgtctcagatagaaaaccttttggatcacaagatg
gtagagggtcaaatagttagaataatgcctgactgtcatgccggattgggatgtgtcatt
ggtacgactatgaccattagcgataaagtggtgccaaatctggtaggagtagatattggc
tgcggtatgctgacgtccaaactcgccaattccaatattaattttgaagaactggattca
tttatcaggagagaaatccctgcaggattcaatatcagaaataaagtgcaccccaatatg
agagaactggatattaagaaattaagagcgcttagatacattgattatgaaagagcaata
cattcagtcggaactcttggcggaggcaaccactttattgaggtcggtaaagactcaaat
ggtgttttatacttggtagtacacaccggttccagacatttaggatctcaagtagctgaa
cactatcagaggcttgccataaaaactaccatggagaatttaaaagaggaaaaggaaaag
gaattactggaattaaatccgaaggtaaatcttaaaaaagagttaaggagatttgaaaag
aagatttccggaaccgaaaagcagttgatgtatcttgagaacaaaaatatggatgattat
cttcatgatatgaaactggttcaaaagtatgcctcactcaatcggaggacgataactgaa
ataattgccaaggggctggggttggaaatcagagaaagctttgagactattcacaattat
atagacttagatgaaatgattttacgaaagggagccatttcagctaagaaaggcgagctt
gtactgataccgatgaatatgagagacggttcgctgttttgtagaggcaagggaaatccg
gtatggaataattcagcacctcatggagcaggtaggcttatgagtagaaaagatgcaaga
gacagctttaaactggaggactttaaaaataaaatggagggtatatatactacctctgtt
tcaaaggcaaccttggatgaagatccggatgcttacaaaccaatggaaagtataatagaa
gccatagatgatacggttgaaataattgacagattgattcccgtctataattttaaaagt
aattaa
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