Microaceticoccus formicicus: VZL98_11000
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Entry
VZL98_11000 CDS
T11006
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfom Microaceticoccus formicicus
Brite
KEGG Orthology (KO) [BR:
mfom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VZL98_11000 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfom03400
]
VZL98_11000 (ligD)
Enzymes [BR:
mfom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VZL98_11000 (ligD)
DNA repair and recombination proteins [BR:
mfom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VZL98_11000 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WVH64567
LinkDB
All DBs
Position
complement(2322255..2323004)
Genome browser
AA seq
249 aa
AA seq
DB search
MKGCQRFYIKIFDNTRCPKGVSGTCFYKKHPASAGKGTVATPIINRKGKSEDYFYIESKQ
GLISEAQMGSLEFHTWGSNVDHLDKPDIMVFDLDPDEGMDLSTVRQGVMDVKEILSELSL
KSYLKTSGGKGYHILVPLQPSASWDAFYEFSRLVAVVMEKKWPDRYTSNVRKASRKGRIF
IDWIRNGRGATSIAPYSLRARKGAKVSMPISWDELDTVAPDGINMWDALQRIDKEDPWKD
FFQNNQRLK
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atcaagggttgccagagattttacattaaaatctttgacaatacccgttgtccaaagggg
gtatcaggtacctgcttctataagaaacatcccgcttcagctggtaaaggcactgtagct
acacctattataaatagaaagggtaaatcggaagattacttttatattgaaagtaaacag
ggcctaatatcagaggcgcagatggggagcttggagtttcatacttggggaagtaatgta
gaccacttagataaaccggacataatggtattcgatttagatcctgatgagggaatggat
ctttctacagtaaggcaaggggttatggatgttaaggaaattctctctgaactttccctg
aagtcatacctaaaaaccagtggaggtaagggttaccatatacttgttcccctacaacca
tctgctagctgggatgccttctatgagttttcaaggcttgtggctgtggttatggaaaag
aagtggccagaccggtatacaagtaatgtaagaaaggctagccgtaagggaagaatcttt
atcgactggattcgtaacggtaggggagccacctctatagcaccatattccctaagggca
agaaaaggagctaaagtatcaatgcctatttcctgggatgagctagacaccgttgcacct
gacggtatcaatatgtgggatgcactccaaaggattgacaaggaagatccatggaaggac
tttttccaaaataaccaaaggctaaagtaa
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