Entry |
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Name |
(RefSeq) collagen alpha-1(III) chain-like
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KO |
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Organism |
mfoo Montipora foliosa
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:mfoo00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137968111
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137968111
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:mfoo00536]
137968111
Glycosaminoglycan binding proteins [BR:mfoo00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
137968111
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
8:49986720..50073387
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AA seq |
1404 aa
MGFFDSKIALAVYLALWICKTHAQHGGMGDVIPIQIDPALKGDQGDPGNKGRGGLPGPPG
PRGGQGEPGVNGPDGPPGPRGPNGPQGPIGPPGPPGNPLVITIGIPGAPGKRGDRGPAGR
DGPAGLPGEPGSPGAPGMRGLPGPPGAPGDAGQPGRPGQNGTVGQPGLRGPVGPPGSPGS
TGPNGEKGADGAKGDRGRMGLKGPKGLRGAQGRKGDQGIAGADGRNGTNGLPGDRGETGP
DGPPGPSGVMGQNGQGGIRGQPGPPGVPGPTGVPGSPGEKGSTGDPGVAGEQGKQGLQGR
RGGQGPQGDPGTDGNPGSDGSEGQKGAQGDPGPMGPQGLPGAPGRPGKAGEDGSVGPSGA
QGDSGPNGPPGLPGQTGTRGDQGPPGAPGPKGPSGRQGRRGKTGRLGATGEQGPPGEQGP
RGAVGAAGIPGTDGRRGEPGHNGNDGVKGERGPDGIPGEDGIPGPRGPPGPPGSPGGDGK
NGDKGAKGKDGEPGKSGPPGPPGPPGSVGMTGKKGELGAFGKPGAAGPPGPKGPQGARGD
FGERGETGQPGTDGAPGQRGLPGPVGIPGLMGSQGEPGAPGSPGPDGKKGPPGERGRDGL
PGDPGPVGPQGELGPQGESGIKGEKGRPGENGADGTPGERGERGPQGAQGNAGASGPPGL
PGSPGPVGNKGDPGDPGPPGPRGNPGRDGKRGYAGTPGSPGAQGETGPRGTPGLFGTPGV
PGDAGLSGPRGPQGPPGPSGENGADGASGPPGAPGLMGDQGEQGAPGDMGEVGPEGDVGP
IGPQGPPGTVGAPGIMGAIGVAGPPGDNGAPGPIGLPGPMGPPGQDGERGLDGAKGDPGE
SGADGKRGLTGQPGLDGRPGLRGKQGEAGKRGPPGPPGPPGPRGDAGPPGSNGATGPQGS
AGRNGPRGQPGAGGEPGSDGPPGQPGPDGPPGSPGKPGFRGQDGTPGLPGTPGTPGARGK
KGAKGFPGTTGTDGAPGPRGGAGPRGPSGNRGPKGKEGISGEDGGNGERGLVGDTGEEGA
KGVRGAQGDRGEKGTRGLPGSLGRQGLPGRVGPTGEPGYNGAAGPQGSKGNPGPMGEVGP
DGFTGLPGATGDKGLKGRPGTRGFAGAPGRVGPPGPPGPRGADGYPAAALERISRAGPSK
GPSGGGGGPPAPEPGPGPLEEESERFNRKRRSVDVEMQIADRVAYLAEKMFLLERRANSS
LFPAKTCRDLKICHPGSPLSNGNYRIDPNGGSSEDQFMAFCNFTTKATCVRPKVKKLDKD
TWKTPVDPRMKVAWFAEDLNNDVKIEYEIDEVQLSYLQLLSNHARQEITFRCKNSVAWFD
QSSQNFNKAVKFEGASGHEFSTKSKSKKAMVTVPFDGCQVKDGSLRDTQFVISTSQASRL
PIVDFASYDLAGEIEVEVGQVCFW |
NT seq |
4215 nt +upstreamnt +downstreamnt
atggggttctttgactctaaaatagcgttggctgtttatctcgcactatggatctgcaaa
acacatgctcagcacggcggaatgggtgatgttataccaatacaaattgatccggcgtta
aaaggagaccaaggagatccaggaaacaaaggacgaggtggactaccagggcctcctgga
ccaagaggtggtcaaggtgaaccaggagttaatggacctgatggacctccaggaccccga
ggtccaaatggaccgcaaggacccattggcccacctggtccccctggtaatcccttggtc
atcaccattggtattcctggagctccgggaaaacgtggggatagaggtcccgctggaaga
gatggccctgcgggtctgcctggagaacctggaagcccgggagcaccaggaatgcgtgga
ttacctggacctccaggagcccccggtgatgcagggcagcctggtcggcctggacaaaat
ggaacagtcggtcaacctggattgcgaggccctgttggaccacccggttcaccagggagc
actggacctaatggtgaaaagggtgctgatggtgctaaaggcgacaggggaagaatggga
ctgaaaggaccgaagggtcttaggggagcacagggccgcaagggtgatcagggtattgct
ggtgcggatggaagaaacggaacaaatggattacctggtgatcggggtgagactggtcct
gatggtcccccgggtccctcgggtgttatgggacaaaatggacaaggaggaattcgtgga
caaccgggaccccctggtgtgccaggacccactggagtaccaggatctcctggtgagaaa
ggatccacaggggacccaggagtagcaggagaacaaggaaaacagggtttgcaaggaaga
agaggtgggcaaggccctcagggagatcctggtactgatggaaatcctggcagtgatggt
tctgaaggccaaaagggagcacagggtgacccaggtccaatgggtccgcaaggattgcca
ggtgctccgggacgtccgggaaaagctggggaagatggatctgtaggaccatctggtgca
cagggtgattctgggccaaatggccctccaggactaccagggcagactgggacaagggga
gatcagggtccacctggtgctcctgggccaaaaggtccttctggaagacaaggaagacga
ggcaagactggtcggcttggagctactggagaacaaggaccccccggggaacaaggacct
cggggtgcagtaggagcagctggaatccctggcaccgatggaagacgaggtgaacctgga
cacaatggcaacgatggagtgaagggagaaaggggacctgatggaattcctggagaagat
ggaatacctggtccaaggggtcctcctggcccccctggttctcctggaggtgatggcaaa
aatggagataagggagctaaaggaaaagatggcgagccaggaaaatcagggccaccggga
cctccaggacctccgggtagtgttggaatgactggaaagaaaggagagctgggtgcattt
ggtaaaccaggtgctgcaggcccgcctggacccaaaggacctcagggagctcgtggagac
tttggagaacgtggtgaaactggacaaccaggaactgatggtgcacctggccaaagaggc
ctacctggtcctgtcggcattccgggtctcatgggatcccagggagagcctggggctcct
gggtcaccaggtccagacggaaagaagggcccacctggtgaaagaggacgggatggactt
ccaggagaccctggaccagttggacctcaaggagagctcggcccacaaggggaatcaggc
atcaaaggtgaaaaaggaaggccaggagagaatggtgcagatggaacccctggtgagcgt
ggtgaaagaggaccgcaaggagcacagggcaatgctggagcatcaggtcctcctggactt
ccaggttccccaggtcctgtcggaaacaagggagatccaggtgatcccggcccccctgga
ccacgaggaaatccgggaagagatggcaaaagaggttatgctggtactcctgggtcacct
ggagcacagggagaaacaggaccaagaggaacccctggactgtttggaacacctggtgtc
cctggagatgctggtctttctggtccccgtggacctcaaggtcccccaggcccttccgga
gagaatggagcagatggtgcaagtggcccacccggtgcaccagggcttatgggagaccaa
ggagagcagggtgctcccggagacatgggtgaagttggaccagagggtgatgtggggcct
attggacctcaaggaccacctggaactgtaggagctcctggtatcatgggagctattggt
gtggccggacctccaggtgataatggagcccctggaccaatcggtttacccggacccatg
gggcctcccggtcaagacggagaaagaggattggatggagctaagggtgaccccggtgaa
tctggggcagatggcaagagaggtctgaccggacagcccggcttggatggaagacctggg
ctgcgaggaaaacaaggagaggctggcaaacgaggacccccaggcccacccggaccacct
ggaccgagaggagacgcaggcccaccaggaagcaatggtgcgacaggaccccaggggtct
gcgggccgcaatggaccaaggggacagcctggagctggtggtgaacctggaagcgatggc
cccccaggacagcccggaccagatggaccacctggttctcctggaaaacctggattccgt
ggccaagacggcacaccgggtctaccaggcactcctggtaccccaggggcaagaggcaaa
aagggtgcaaaaggattccctggcacgactggaacggatggcgcaccaggaccgcgtgga
ggggctggaccgagaggtccttctggtaacagaggaccgaaaggaaaggagggtatctca
ggcgaagatggtggcaatggtgaacggggacttgtaggagatactggggaagaaggtgct
aaaggtgtacgcggagcgcaaggagacagaggagaaaagggtacgcgaggtcttcccgga
tcgcttggtcgtcaggggttaccaggcagagtgggaccaacaggtgaaccaggatacaat
ggcgctgcaggaccccagggatcaaagggtaatccgggtcccatgggcgaagttggtcca
gatggattcactggtttgccgggtgcgaccggcgataagggtttgaaaggccgaccgggt
acacgcggctttgcgggagctccaggcagagtgggaccaccaggaccccccggacctcgt
ggtgcagacggctatcctgccgcagccctagaacgcatatcgcgcgctggcccaagcaaa
ggaccctctggaggcggcggcggcccacccgctcctgaacctgggccaggaccccttgag
gaggaaagcgaacgattcaacaggaaacgacgatcagttgacgtggaaatgcagatcgca
gaccgtgttgcataccttgccgaaaagatgttcctactagagcgcagagccaattcatcc
ttgtttcctgcaaagacctgccgagatctcaagatttgtcatcctggttcgccactcagt
aatggtaactatcgtattgatcctaatggtggctcatctgaagaccagttcatggctttt
tgcaattttaccactaaagcaacgtgcgttagacctaaagtgaaaaagcttgacaaggat
acatggaaaacacctgttgatccccgaatgaaggtcgcttggttcgcggaagatttgaac
aacgatgtcaagattgaatacgaaatcgacgaggtccaactttcatatctacaacttctc
agcaaccacgcccggcaagaaataaccttcagatgtaaaaactcggtagcctggtttgac
caaagctcccaaaacttcaacaaagcagtcaagttcgaaggcgccagtgggcacgaattt
agcaccaaatccaagtcgaagaaagccatggtgacagttccatttgatggctgccaggtt
aaggacggatcattgcgtgacactcaatttgtgataagcaccagtcaagcctctaggctt
ccaattgtggactttgcctcttatgacttggccggagaaattgaagttgaagtgggccaa
gtttgtttttggtga |