Montipora foliosa: 137992195
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Entry
137992195 CDS
T10576
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mfoo Montipora foliosa
Pathway
mfoo03013
Nucleocytoplasmic transport
mfoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137992195
03015 mRNA surveillance pathway
137992195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoo03019
]
137992195
Enzymes [BR:
mfoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137992195
5.6.2.5 RNA 5'-3' helicase
137992195
Messenger RNA biogenesis [BR:
mfoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137992195
mRNA cycle factors
Common to processing body (P body) and stress granule
137992195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
SLFN-g3_helicase
NPHP3_N
NAT10_TcmA_helicase
AAA_16
nSTAND3
SRP54
ATPase
AAA_22
TraI_hel_assoc_N
nSTAND_NTPase5
PhoH
AAA
AAA_25
Motif
Other DBs
NCBI-GeneID:
137992195
NCBI-ProteinID:
XP_068693451
LinkDB
All DBs
Position
2:complement(5495320..5519237)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSTVDSYGPASQTLTFLDTEEPDFGADTQGSEYEFHDFTVPSQTQTQSQASQPESSQPLV
NGNAVDQKEDLSNGPVAVNEDSKTDSGVSKVSNALGELNFEEDEDETFYTKDLPAYACRY
CGVHDPASVVQCIQCKKWFCNGRGNTAGSHIVNHLVRAKHKEVTLHKDGPLGETILECYN
CACRNVFLLGFIPAKADSVVVLLCRQPCATQSNSKDMNWDQAQWQPLINDRCFLSWLVKV
PPDEDQLRARQISAQQINKLEELWKDNPEAKLEDLDKPGVDDEPQQVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNIVVRWDIGLNKKRIAYFSFPKTNDDMRLMPGDELRLR
YVGELHKPWQGVGHVIKVPNNFGEEVGIELRSNLGAPVECTHNFVVDFVWKSTSFDRMQT
GMKTFAVDETSVSGYIYHKLLGHEVEEQVVKCQLPKRFSAQGLPELNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSASVVYHLAKQSNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLC
AKSREAIDSPVAFLALHNQVRNMDSVPELQKLQQLKDEQGELSAADEKRYRSLKRNCERD
LLQHADVICTTCVGAGDPRLSKFRFRTVLIDESTQATEPECMVPVVLGCKQLILVGDHCQ
LGPVVMCKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSEFPSNLFYDGTLQNGV
TIAERQQPGIDFPWPVPDKPMFFYSTMGQEEIASSGTSYLNRTEAANVEKIATRFLRAGV
KPEQIGVITPYEGQRAYLVQYMQFSGSLHANLYLEIEVASVDAFQGREKDYIILSCVRSN
EHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKILSRQPLWNHLLNYYKENKALMEGPLNN
LKESMIQFSKPRKLVNRTNPGGRFMSNTMFDAREALIRGSVYDRQMPGAPMDHPAAYDTY
FHTHDRLSYIGAERTIPPAAAARIPVPVGMFIPPVPPPHHNYFGQPLAGRMPPHGRPVQQ
PRQRNQRNHHPHQPMGYAPHMPASQASQDASQPLSQGPLTQGGMSMSQPMASQPLSQPDL
SQDSYLGDDLNLKSQADAVLSQDSTYQGERGGYMNSLPDYSQPNYASQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtagactcttacgggcctgcatcacaaacgcttacttttttagacaccgaa
gaacctgatttcggagcagatacccagggcagtgaatatgaatttcacgattttactgtc
ccttcccaaactcaaacgcagtcacaagcttcgcagcctgaaagtagccagcctttggtt
aacggaaatgccgttgaccagaaggaagacctcagcaatggtccagtagcggttaatgaa
gattcaaagactgacagtggcgtttctaaggttagcaacgctttaggagagctaaacttt
gaagaagacgaagacgaaaccttttacacaaaagatctcccagcctacgcttgcagatat
tgtggcgtccatgaccctgcatctgtggttcagtgtattcaatgtaagaaatggttttgt
aatggcagaggaaacacggctggcagccacattgttaaccatttggtcagagccaaacac
aaagaggtgacacttcacaaggatggtcctctgggagaaacaattttggaatgttacaac
tgtgcctgtcgcaacgtcttcttgttgggcttcattccagccaaggctgactctgtggtg
gtgttgctatgcaggcagccctgtgcaacccagagtaactcaaaggatatgaactgggat
caagcccagtggcagcctctgatcaatgatcgatgtttcttgtcctggcttgtcaaagtc
ccccctgacgaggatcagctgcgagcaaggcagatttcagcccagcagataaacaagcta
gaagaactttggaaggataatccagaggccaagctggaggatttagacaagcctggagtt
gatgatgaaccacagcaagttcttcttaggtatgaggatgcttatcaatatcagaacatc
tttggcccactggtaaagctggaggcagattatgataagaaactaaaagagtcacagacc
caagataacatcgttgttcgctgggatattggtcttaacaagaagaggattgcctacttc
tcgtttcccaaaacaaatgatgacatgcgactgatgcctggtgatgaactacgcctgcga
tacgtcggtgaattgcataaaccctggcagggagttggtcatgtaatcaaagtcccaaac
aactttggcgaagaagttgggattgagttgcgcagcaatctgggtgccccagtagaatgc
actcacaactttgttgtagactttgtctggaagtcaacatcttttgacagaatgcagacc
gggatgaagacctttgctgttgatgagacgtcagtcagtggctacatttatcacaaacta
ctgggacatgaagttgaagagcaagtcgtcaagtgtcagctgcctaagaggttctcagct
caaggattgccagaacttaaccactcacaggtttatgccgtgaaaactgttcttcagaga
ccactcagcctcattcagggaccacctggcactggaaagacagtgacatctgctagtgtt
gtttatcacttagccaaacaaagtaatggtcaagttctggtctgtgctccaagtaatatt
gctgttgatcaactgacagagaagattcacaagacaggccttaaggttgtgagactttgt
gctaaaagtagagaggcaatagactcccctgtggcattccttgctctgcacaatcaggtg
cgcaatatggacagtgtacctgaacttcaaaagcttcaacagctaaaagatgaacaaggg
gagttgtctgctgctgatgagaaaagatatagatccctgaagaggaactgtgagcgggac
cttctgcagcatgcggatgtgatctgcaccacatgtgttggtgctggagatcctcgtctt
tccaagtttagattccgaactgttttgattgatgagtcaacacaagccactgaaccggag
tgcatggtcccagtggtgcttggttgcaaacagctgatcctggttggagatcattgccag
ctggggcctgttgtcatgtgcaagaaggcagccaatgctggtctttctcagtccttgttt
gaacgccttgtggtcctgggaattcgccccatccgtcttcaagttcagtaccgtatgcac
ccctccctgagcgagttcccatccaatctgttttatgatggaacacttcagaatggagta
actattgccgaacgccaacagccaggaattgacttcccgtggcctgtgcctgacaaaccg
atgttcttctactccaccatgggacaagaggaaatcgcctcctctggtacatcttacctg
aacaggactgaagctgcaaatgtggagaagattgccacacgtttccttcgtgctggagtc
aagccagaacaaattggagttatcactccatatgaaggccagagagcttatctcgtacag
tacatgcaattcagtggatctcttcatgccaatctttacctggaaatagaggtggccagc
gtggatgctttccagggacgtgaaaaggattacatcatcctgtcttgcgtgagatccaat
gaacaccagggcattggtttcctgaacgacccaaggcgtttgaatgtagctttgacacga
gcaaagtacggtatcattgtcattggcaatcccaagattttgtccaggcaaccgttgtgg
aaccatcttttgaactactacaaggaaaataaagctttgatggaaggaccactaaataac
ctgaaggagagcatgatccagttcagcaaaccaagaaagcttgtcaacagaaccaatccg
ggaggtcgtttcatgagcaacacgatgtttgacgcccgcgaggcgttgatccgcggcagt
gtgtatgaccgacagatgccaggcgcaccaatggaccacccagctgcgtacgatacttac
ttccatacccatgaccgtctgagctacattggtgctgaacggaccatcccaccggcagct
gcagcaaggatcccggtacccgtgggaatgtttattcccccggtacctccaccgcatcac
aactactttggacagcctttggcgggtcgtatgccgccacatggtcgtccagttcagcag
ccccggcaacgcaatcagcgaaatcatcacccacaccagccaatgggctatgctccacac
atgccagcaagccaggcaagccaggatgcctcccagcctctgtcccagggccccctgact
cagggcggaatgtccatgagtcagccaatggcctctcagcccttgtcccaaccagacctg
tctcaagacagttaccttggcgacgacttgaacctcaagtctcaggcagacgccgtgcta
tcacaggactccacctaccagggggagaggggaggttacatgaactccctaccagactac
tcccagccaaactatgcctcccagtactga
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