Montipora foliosa: 137993193
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Entry
137993193 CDS
T10576
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mfoo Montipora foliosa
Pathway
mfoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137993193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoo03019
]
137993193
03041 Spliceosome [BR:
mfoo03041
]
137993193
Messenger RNA biogenesis [BR:
mfoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137993193
Spliceosome [BR:
mfoo03041
]
Complex B
Other components
Prp19-related factors
137993193
Complex C
137993193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
TPR_12
TPR_8
ARM_TT21_C
Mad3_BUB1_I
TPR_7
ARM_TT21
RPN7
PPR
RNA_pol_3_Rpc31
DHR-2_Lobe_A
NRDE-2
DUF6440
Motif
Other DBs
NCBI-GeneID:
137993193
NCBI-ProteinID:
XP_068695000
LinkDB
All DBs
Position
2:43531465..43553195
Genome browser
AA seq
847 aa
AA seq
DB search
MPVSSRNLIIEEEDLPYEEEIIRSPYSVKFWMRYIEHKAKKGSNKALNLLYERALKELPG
SYKIWYLYLKERRKQVRGRPITDPAYEDVNNAFERSLVFMHKMPRIWIDYCQFLVDQCKV
TRSRRTFDRALRALPITQHTRIWPLYLKFVRKHHIPETAVRVYRRYLKLEPENTEDYIDY
LKSVGWLDEAAARLAFIVNKEKFVSKEGKSNHKLWQELCELISKNPDKIKSLKVTDIIRG
GLRRFSDSLGQLWNSLADFFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEESM
ISAKMETTAEMGATEEDDIDLELRMARFENLMDRRPLLLSSVLLRQNPHNVHEWHKRIKL
YEGKPKEIINTYTEAVQTVNPKLASGKPHTLWVEFAKFYEQHRQLAEARVIFDKATKVNY
RKVDDLASVWCEFSEMEIRHENYQQALDLMRRATAMPSAKTDYYDETETVQRRVYKSLKL
WSMYADLEESLGTFQSTKAVYNRILDLRIATPQIIINFCTFLEEHHYFEEAFKIYERGVA
MFKWPNVFDIWNTYLTKFIHRYGGKKLERARDLFEQVLEGCPAKFAKCFYLMYAKLEEEH
GLARHAMTIYERATKAVLPEEQFEMFNLYIKQAAEIFGVTHTREIYEKAIEVLLDDQARE
MCVRFADLERKLGEIDRARAIYMHASQLADPRTTPAFWKVWHDFEVRHGNEDTFREMLRI
KRSVQAQFNTQVNFMSAQMLAAAASKTAGASTDEPVVDDMQRLEQQAQAVAAKDVTAKLK
EKVLFVRGETSDSDNKETEAVANPEEIDIDEDDDDDDDDDNANEQDVQVEQQAVPIKVFG
GLRQDDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgagctccaggaatcttattatagaagaagaagatcttccatatgaagaagaa
ataatccgtagtccttactctgtgaaattttggatgagatacatagagcacaaagctaaa
aaaggctccaacaaggccctaaatctgctttatgaacgtgctctaaaggaactaccagga
agctacaagatttggtatctgtatcttaaagaaaggagaaagcaagttcgaggaagaccc
ataacagatccagcgtatgaagatgttaacaatgcgtttgaaagatccctggttttcatg
cacaagatgcctagaatttggatagattattgccagttcttagttgaccaatgcaaagtg
acaagatcaaggcgcacctttgaccgtgctctaagggctcttcctatcactcagcacacc
cgcatttggccactttatctcaagtttgtccgcaaacaccacattcctgagacagctgtg
agagtgtacagaagatatttaaagcttgaaccagaaaacactgaagattatattgattat
ctcaagtctgtgggctggctggacgaagcagcagcacggctggcattcatcgtcaacaag
gagaaatttgtttccaaggaggggaaatcaaatcataagctttggcaagagctttgtgaa
cttatttccaagaatccagacaagataaagagtctcaaagttactgacattattcgtggg
ggattgcgcaggttttctgacagtttgggtcaactttggaactctcttgctgatttcttt
ataagaagtggacactttgaaaaggctcgtgatgtttatgaggaggctattcaaacagtg
atgactgtcagagattttggacaagtgtttgatgcatatgcacagtttgaagaaagcatg
ataagtgcgaaaatggaaacaacggcagaaatgggagctactgaagaagatgatattgac
ttggaacttaggatggcaagattcgagaatttaatggatagaagacccctgctgcttagc
agtgtgctgttgcgccaaaaccctcacaatgtccacgagtggcataaaagaatcaagtta
tatgagggaaaacctaaagaaatcatcaacacatacacagaagcagtccagacggtaaat
ccaaagctggcatcaggaaaacctcacacactgtgggtggagtttgctaagttttacgaa
cagcacagacagcttgcggaggctagggtgatatttgataaagctacgaaagtgaattat
cgcaaagtggatgacttggccagtgtatggtgtgagtttagtgaaatggaaatcagacat
gaaaactaccaacaggctcttgatcttatgaggagagcaacagccatgccgtctgcgaag
acagactactatgatgagactgaaacggtacaaagacgtgtctataagtctttaaagctg
tggtccatgtatgccgacctggaagagagtttaggcacatttcagtcgaccaaggcagta
tacaaccgtattttggacctgcgaatagcaactcctcagatcatcataaacttctgtacg
tttcttgaagagcatcactattttgaggaagctttcaagatttatgagcgcggcgttgcg
atgttcaaatggccaaatgtgtttgatatctggaacacgtatctgacaaagtttatccac
agatatggtggcaagaaattggagcgtgcaagggacctctttgaacaagttttggaaggt
tgtcctgctaaatttgcaaaatgtttttatttgatgtacgccaagcttgaggaagagcat
ggtcttgctcgtcatgctatgacgatatacgagagagctactaaagccgtcctaccagag
gaacaatttgaaatgttcaacctgtatataaaacaagcagcggagatatttggtgtgaca
cacacgcgtgaaatctacgaaaaagccattgaagtgttactagatgatcaagcgagagag
atgtgtgtgaggtttgctgatcttgagcgtaaactgggagagattgaccgagccagagca
atttatatgcacgcttcacaattggcggatccgcggaccaccccggcgttctggaaagtg
tggcatgacttcgaggttcggcatggaaacgaggatacattccgtgaaatgttacgaatc
aaaaggagcgtgcaggcgcaatttaacacacaggttaatttcatgtcggcgcaaatgttg
gcagcagctgcaagcaaaaccgctggagcaagtacagatgaaccagttgttgatgacatg
cagcggttagaacagcaggcccaagcagtagcagccaaggatgtgactgccaagttaaaa
gaaaaagtcctgtttgtcagaggggaaaccagtgattctgacaataaagaaacggaagct
gtggcaaacccggaagaaatagacattgacgaagatgatgatgatgatgatgatgatgat
aatgctaatgaacaagacgttcaagttgaacaacaagcagtcccaatcaaggtttttggt
ggattaagacaagatgatgactga
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