Montipora foliosa: 138000131
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Entry
138000131 CDS
T10576
Name
(RefSeq) RNA-splicing ligase RtcB-like
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfoo Montipora foliosa
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfoo03016
]
138000131
Enzymes [BR:
mfoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138000131
Transfer RNA biogenesis [BR:
mfoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138000131
Prokaryotic type
tRNA splicing ligases
138000131
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
138000131
NCBI-ProteinID:
XP_068702408
LinkDB
All DBs
Position
4:18009352..18019651
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AA seq
453 aa
AA seq
DB search
MYFERMFRWRSVGSHFFSSLERGLGHLVPMFRGGVVSNRSSSFVVLGDAKNKGAPVKAWV
KGVPVEKDATDQLLSLAKLPIVHSHVAAMPDMHLGKGACVGCVVATVDAIIPSAVGVDIG
CGMMAVRTTLSAKDLPDSLKNLRIEIEQAVPHGRTNQGGKGDLGAWKASNLPKHVATEWE
KLKKEYEYICSRQPMAKAQNNVNHLGTLGTGNHFIEACLDEEDRLWFMLHSGSRGPGNRI
GTVYIELAKNDMMKLDKRVKVDKDLAYLQEGTRNFDDYVFAVNWAQKFARLNRDIMMSSV
IMAARACPDMPTFDLDPKSKAVNCHHNYVNVENHFGKEVFLTRKGAVSARDGELGIIPGS
MGARSYIVKGKGNPESFHSCSHGAGRTMSRAKAKKLFTVEDHVCATQGVECRKDAGVIDE
TPMAYKDIDDVMAAQTDLVDVVHRLKQVLCVKG
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcgaaagaatgttccgatggaggagtgtagggtcacactttttctcttcactt
gagagagggttaggccatctggttccaatgttcagaggaggagtggtttcaaacaggagc
tcttctttcgttgtacttggtgacgcaaaaaataaaggtgctcccgtaaaagcatgggtc
aagggagtgccagttgaaaaagatgcaacagaccaacttctttccttggcaaaattaccc
attgtacattcacatgtggcagctatgcctgatatgcatcttggtaaaggtgcatgtgtt
ggatgtgttgttgcaactgttgatgctatcattccctcagcagttggtgtggacattggt
tgtggaatgatggcagtgaggacaacactgtcagccaaagatctgccagattccctaaag
aatcttcgcatagagattgaacaggctgttccacatggaagaactaatcagggtggcaag
ggtgatcttggggcatggaaggcaagcaatctgccaaaacatgtggcgacagagtgggaa
aaacttaaaaaggaatatgaatatatctgcagtcgacaaccaatggccaaggcacagaat
aacgtcaatcacttgggcacattgggaactggaaaccatttcattgaggcctgccttgat
gaagaagaccgcttgtggttcatgttacattcaggatcacgtggtccaggaaacagaatt
ggaacagtatatattgaactggccaagaatgacatgatgaagctagacaaacgagtcaag
gttgataaagatcttgcctatcttcaagaaggaacaaggaactttgacgattatgtcttt
gcggtgaactgggctcaaaagtttgcccgtttaaatcgcgatataatgatgtccagtgtg
attatggcagcacgcgcatgtcctgatatgccaacatttgacttggatccgaagagtaaa
gcagtcaactgccatcataattatgtgaatgtagaaaaccactttggaaaagaagtgttt
ctcacgcgaaagggagctgtttctgctcgtgacggagaattaggtatcattccaggttcc
atgggagcgcgatcatacatcgtaaaaggcaaaggaaacccagagtcctttcacagctgt
agtcacggtgcaggaagaaccatgtcacgtgcaaaagccaaaaagttgttcactgttgaa
gatcacgtgtgcgcaacccaaggagtagaatgtcgaaaggatgcaggcgtcattgatgaa
acaccaatggcttacaaggatatagatgacgtcatggcagcccagactgatttggtagac
gtcgtacacagattgaagcaagtgttatgtgtgaaaggttga
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