Montipora foliosa: 138005344
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Entry
138005344 CDS
T10576
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mfoo Montipora foliosa
Pathway
mfoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138005344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfoo03021
]
138005344
03019 Messenger RNA biogenesis [BR:
mfoo03019
]
138005344
Transcription machinery [BR:
mfoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138005344
Messenger RNA biogenesis [BR:
mfoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138005344
U7-dependent histone pre-mRNA processing factors
138005344
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
138005344
NCBI-ProteinID:
XP_068707694
LinkDB
All DBs
Position
1:65845948..65887143
Genome browser
AA seq
688 aa
AA seq
DB search
MAAAVKRKPDTIIPPEESDLLKITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMSGLE
SLPFLDEIDTAEIDLLLVSHFHLDHCGSLPWFLEKTTFKGRVFMTHATKAIYRWLLSDYV
KVSNIATEDMLYTESDLEKSMDKIETIHFHQEKEVNGIKFWCYHAGHVLGAAMFMIEIAG
VKILYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREDRENRFTSTVHDIVN
RGGRCLIPVFALGRAQELLLILDEYWQNHPELHDVPIYYASQLAKKCMSVFQTYVNAMNE
KIKKQIAISNPFVFKHISNLKGIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNG
VIIAGYCVEGTLAKTLMSEPEEIATMTGQKIPRKCSIDYISFSAHTDFEQTSEFIRILKP
PHIVLVHGEQNEMGRLKAALIREYEDNPDASVVVHNPPNTQSVELYFRGEKMAKVMGSLA
AEKPEHGKPLSGILIKRGFNYHLIAPEDLQNYTELATSVLTQKQTVAFHGAFSLLLQCME
NLAGEVEQLTLQGGKLALKVFKAITVVQDKRSVVVEWVANPVNDMYADAVLAVILQVESN
PTAAQATRSKKSDLSKFPERLMKLLRGTYGNDAVTRTTRGDQISVRLDGQTAVINLNSLE
VDCLDETLQSTVSSAVKRLHNAMSPCLP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggtaaagagaaaaccagatacaataatcccacctgaggagagtgatttg
ttgaaaataactccattgggttctggacaagaagttgggaggtcatgtcacatcttggaa
ttcaaagggaagaaagtaatgttggattgtggtattcaccctggaatgtctgggctagaa
tctcttcctttccttgatgaaattgatacagcagaaattgatcttctccttgtgagccac
tttcacttggatcattgtggatcccttccctggttccttgaaaagacaacatttaaaggg
agagtgttcatgacacatgcaaccaaagcaatatacagatggcttttgtcagattatgtg
aaagttagcaatattgcaacagaagatatgttgtacacagagtcagacctggaaaaaagc
atggacaagattgaaacaattcattttcatcaggagaaagaagtcaatggaataaagttc
tggtgttaccatgcagggcatgtgcttggagctgcaatgtttatgattgaaattgcagga
gttaagattctttacactggtgatttttcacgacaagaagatcgccatcttatggctgca
gagattccaagcatttcaccagatgttcttatcattgaatcaacttatggaactcacatt
cacgagaaacgtgaagacagagaaaacagattcacaagtactgttcatgatattgtgaat
cggggtggacgatgtttgattcctgtgttcgctcttggaagggctcaagagttgcttctt
attttggatgaatattggcaaaaccatccagagctacatgatgttccaatctattatgca
tcgcaacttgccaaaaagtgcatgtcagtattccagacatatgtgaatgcaatgaatgag
aaaataaagaaacagattgctatttccaacccgtttgtcttcaaacacatttcaaacctt
aagggcatcgatcagtttgatgacattggaccatcagtggtgatggccagtccaggaatg
atgcagagtggtctttcccgtgaactgttcgagcagtggtgtacagatcgcaggaatggt
gttatcattgctggatactgtgtcgaaggaacccttgcaaagaccctgatgtctgaacca
gaggagatagcgaccatgacagggcagaagattcctcgaaaatgttccatcgactacatt
tccttctctgctcacactgattttgaacaaacgagtgaatttattcgaattttaaagcct
ccacatatagtgcttgtgcacggtgaacaaaacgaaatgggtcgattgaaagctgctctg
atccgagaatatgaagacaacccggacgccagtgtagtggttcacaatcccccaaacact
cagagtgtggagttgtatttccggggagagaagatggccaaggttatgggcagcttagcc
gctgaaaaaccagaacacggtaaacctctgtcaggaattttgatcaagcgtggattcaat
tatcatttaattgcaccagaagatctgcaaaattataccgaactggctacaagcgtccta
acacagaagcagactgtagcatttcacggcgctttctcgctgcttcttcaatgtatggag
aacttggcgggagaagtggaacaacttacgttacaaggaggaaaacttgccttgaaagta
tttaaagctattaccgttgttcaggataaaagaagcgttgttgtggagtgggtggctaat
cctgtgaatgacatgtacgctgatgcagtgctggctgtaattcttcaagttgaatcgaat
cctactgcagctcaagcaactcgttccaagaagtcagacttgagcaagtttccggaaaga
ttaatgaaacttttgagaggaacatatggcaatgacgctgtcactagaaccacaagagga
gatcaaatttctgtgcgattagacggacaaacagctgttatcaacctcaattcactggaa
gtagattgcttggatgaaactttacagagtactgtttcttctgcagtcaagcgtcttcac
aacgccatgtcaccttgcctcccctga
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