Montipora foliosa: 138011274
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Entry
138011274 CDS
T10576
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfoo Montipora foliosa
Brite
KEGG Orthology (KO) [BR:
mfoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfoo03016
]
138011274
Enzymes [BR:
mfoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138011274
Transfer RNA biogenesis [BR:
mfoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138011274
Prokaryotic type
tRNA splicing ligases
138011274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
138011274
NCBI-ProteinID:
XP_068714331
LinkDB
All DBs
Position
7:complement(20561234..20582980)
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AA seq
508 aa
AA seq
DB search
MAEAHRTYKEECSFIERIDHNSFLIKKGFVPNMKVEGVFYINDHLEKLMFDELKNWAGSQ
GIGGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSLPEAVVSPGGVG
FDINCGVRLLRTNLNEKDVQPVKEQLAQSLFNHIPVGVGSKGVIPMGAKDLEEALSMGID
WSLREGYAWAEDKEHCEEYGRMLQADPAKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEI
FNTYAAKKMGVDHVGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAR
ISSKEGQEYLQGMAGAANYAWVNRSTMTFLTRQAFGKVFKSTPDDLDMHVIYDVSHNIAK
IEEHILDGVQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEK
GMKTTFGTTCHGAGRALSRAKSRRQLDYQDVLENLKAQGISIRVASPKLVMEEAPESYKN
VTDVVNTCHDAGISEKAIKLRPIAVIKG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagctcaccgtacatacaaggaagaatgctcctttatcgaacgcatagatcac
aattcgtttcttatcaagaagggtttcgttcctaacatgaaggttgaaggtgtcttttac
attaatgatcatcttgagaaattgatgtttgatgagttaaaaaactgggctggaagtcaa
ggcattggaggatttctacctggtgtcaagcaaattgcaaatgttgcagcattgcctggt
attgttggtaaatctgttgggttgccagatgtacattctggttatggatttgctattggt
aacatggcagcatttgacatgtctctaccagaagcagttgtatcaccaggtggtgttggt
tttgatattaactgtggcgtacgactcctaagaacaaatctcaatgaaaaggatgttcaa
cctgtcaaagaacagcttgcacagtcactttttaatcacattcctgttggtgttggatcc
aaaggtgtaattcccatgggagcaaaagatttggaagaggctctttccatgggaattgac
tggtctcttagagaaggctatgcatgggctgaagacaaagaacactgtgaggagtatggc
cgcatgttacaagctgatccagcgaaagttagccctagagcaaagaagagaggattacct
cagctgggcacacttggagctggcaatcactatgctgaaatccaagttgttgatgaaata
tttaacacatacgcagccaagaagatgggagtcgatcatgtgggacaggtttgtgtcatg
attcatagcggcagtagaggtctcggacatcaagttgcgactgatgcgttagttgcgatg
gaaaaggcaatgaaaagggacaaaattgaagttaatgaccggcagctcgcatgcgcgaga
atcagttctaaagaaggacaggagtacctccaaggtatggccggtgcagctaactatgcg
tgggttaatcgttccacaatgacattcctaacaagacaagcttttggaaaagttttcaaa
agtaccccggatgatctcgatatgcacgtgatctatgacgtgtcacataatattgcgaag
atagaggagcatattttagacggcgttcagaagactcttcttgtacacaggaaaggttcg
acgagggcgtttccgccccatcatcctcttatccctgtggactatcagttgacaggacag
ccagtacttataggaggaacaatgggtacttgcagttacgttctgacgggtacagagaag
ggaatgaagaccacctttggcactacgtgtcatggagcgggcagagctttgtccagagcc
aaatctcgccgacagcttgactatcaagatgtgctagaaaacctcaaagcgcaaggaata
tccatccgagtagcctcacccaaacttgtcatggaagaggctcctgaatcatacaaaaat
gtaaccgatgtcgtcaacacttgtcacgatgcagggatcagcgaaaaggccatcaagctg
agaccaatcgcggttattaaaggatga
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