Marvinbryantia formatexigens: NQ534_12515
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Entry
NQ534_12515 CDS
T08439
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mfor
Marvinbryantia formatexigens
Brite
KEGG Orthology (KO) [BR:
mfor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mfor03009
]
NQ534_12515 (rlmD)
Enzymes [BR:
mfor01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NQ534_12515 (rlmD)
Ribosome biogenesis [BR:
mfor03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NQ534_12515 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_15
Methyltransf_25
MTS
Met_10
N6_N4_Mtase
PrmA
UPF0020
Methyltransf_4
Methyltransf_11
Methyltransf_12
MethyltransfD12
RrnaAD
PCMT
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
UWO23280
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All DBs
Position
2656340..2657539
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AA seq
399 aa
AA seq
DB search
MKEKKVEEKKAAGEKTVETLTCPVQKKCGGCQFLGMPYAQQLNIKQHQVEKLLRPFGRVC
PIIGMENPYYYRNKVHAVFGRTRTGEIICGTYQENTHKIIPVEQCLIEDRKSEEIIRSIR
GLLKSFKIKTYDEDTGYGLLRHVLVRRGFQSGQIMVVLVLADPIFPSKNNFVSALRRLHP
EITTIILNINAKKTSMVLGEREKTLYGPGYIEDTLLGKTFRISAKSFYQVNPVQTEVLYQ
TAIGYAALTGKERVLDAYCGIGTIGLLAASQAKEVIGVELNADAIRDARINARRNSITNV
KFYNADAGKFMTGLAEQNINVDVVFMDPPRAGSDEAFLSSVVKLQPGKVVYISCNPETLA
RDLKYLTGNGYKVEKIQPTDMFCFTEHVECVVLMSKVEK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaaaaaagtagaagagaaaaaagcggcaggggaaaaaacggtagagacactg
acctgtccggtgcagaaaaagtgcggcggctgtcagttcctgggaatgccctatgcgcag
cagttgaatatcaaacaacatcaggtagagaagctgctccgaccctttggcagagtctgt
ccgattatcggcatggaaaatccatattactaccgtaataaagtgcacgctgtttttgga
agaacccgcaccggagaaattatctgcggcacttaccaggaaaatacgcataagattatc
ccggtggagcagtgcctgatagaggaccggaaatcagaggagataatccgcagcatccgc
gggcttttgaaatcctttaagataaaaacgtatgacgaagacaccggctacggtcttctg
cgccacgtgctggtccgccggggcttccagagcgggcagattatggtggtgctggtactg
gcagacccgattttcccctccaaaaataattttgtgtctgcgctgcgcagacttcatccc
gaaatcacaaccatcattttaaatataaatgccaaaaagaccagtatggtattgggtgaa
agagagaagacgctttatggtcccggctatatcgaggacacccttctcggaaagaccttc
cggatttccgcaaaatctttctaccaggtaaatccggtgcagacggaagtcctttatcag
actgccatcggatacgccgcccttaccggcaaagagcgcgtcctggatgcatattgcgga
atcggtaccatcggtctgcttgcggcgtcgcaggcaaaagaagtcatcggcgtggaacta
aacgctgatgcaatccgcgacgcgcgtataaacgccagaagaaacagcataacaaatgta
aaattctataatgcggatgccgggaaattcatgaccggtcttgcagaacagaacataaac
gtggacgtggtattcatggatccgccgcgggcgggaagcgacgaagcatttctctcttct
gtagtaaaactgcagccaggaaaggtagtgtatatctcatgcaatccggagacactggca
cgggatttaaaatatctgacgggaaacgggtataaggtggagaagatacagccgacagat
atgttctgttttacggagcatgttgagtgcgtggtattgatgtcaaaagtcgagaagtag
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