Marvinbryantia formatexigens: NQ534_14700
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Entry
NQ534_14700 CDS
T08439
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfor
Marvinbryantia formatexigens
Pathway
mfor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQ534_14700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfor03400
]
NQ534_14700 (mfd)
Enzymes [BR:
mfor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQ534_14700 (mfd)
DNA repair and recombination proteins [BR:
mfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQ534_14700 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_22
nSTAND3
Mfd_cyano
IstB_IS21
MFD_D3
UvrB_3rd
Motif
Other DBs
NCBI-ProteinID:
UWO23686
LinkDB
All DBs
Position
3128802..3132341
Genome browser
AA seq
1179 aa
AA seq
DB search
MKAFTAPLKNLEEFEQLCSGLKKNRGILQVSGCIEAQKSHLMYSVGEPYKKKLIITYSEL
RAKEIYENYRFFDSKVLLYPARDLMFYSADIRSHQIGQQRMAVLQALLEEEQVTVITTLP
GCMEHVLPLSCIRDHVLEFAQDSELNPEKLSGQLIEMGYEKTVQVDAPGQFAVRGGIVDI
FPLTEENPVRIELWGDEIDSIRSFDAESQRSIENLETVRIYPAGEAVISDVQAAKAAERI
KKESKKQEKIFRDAMKTEEAHRVRETAQEVCERLLELKERTGLEAFTPYLYEETVSFLDY
FGTDALIMLDEPNRIAEEGRAVQEEFSENMKSRLEKGYILPGQTGILYGQQQIIGELNRR
NCLALCIMDLPRDEWNVTGRYSMTVRSISSYNSSFEQLVKDLKRWKKEGYRVALLCASRT
RAMRLAEDLREHELNSFFTEDMDREIQPGEILLARGNTHKGYEYPLIRFAVITESDIFGK
EKKRRKKQRRYEGTRIASFAELNVGDYVVHESHGLGIYRGIEKIEVDHVMKDYMKIEYSG
GSNLYVLATQSDVIQKYAGSEAKTPKLNRLGTQEWNKTRTRVRAAVQNIAKDLVALYSQR
QNQKGFAYGPDTVWQREFEEMFEFEETDDQLAAIEATKRDMESTKIMDRLICGDVGFGKT
EIAIRAAFKAVQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRFRTPAEQKKT
LVDLKKGLVDILIGTHRVLSKDVEYKDLGLLVIDEEQRFGVTHKEKIKQLKTNVDVLTLT
ATPIPRTLHMSLIGIRDMSVLEEPPMERTAIQTYVMEYNEEMVREAISRELARGGQVYYV
YNRVNTIVEMTNKIAKLLPEANVAFAHGQMKERELERIMYDFINGDIDVLVSTTIIETGL
DISNVNTMIIHDADTMGLSQLYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLHAIRE
FTELGSGIKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLNESVRELKGEADPTDT
FETTIDLDIDAYIPEKYIRNEYQKLDIYKRIAAIENQEEYDDMLEELMDRFGEPPRAVQN
LLAIAHLKAVAHRAYVTELTQKGDFIKFVMYEKTPADPRKIESCIAKHHGRMKFVMESSP
YFLYTRGRVTKKNSTDVLALTRELLEDIGGCLAEKYASE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcatttactgctccgctgaaaaatctggaggagtttgagcagctatgctccggt
cttaagaaaaaccgggggattctgcaggtatccggctgtatcgaggcgcagaaatcgcat
ctgatgtacagtgttggagagccgtacaaaaagaagctcatcatcacctacagcgagctg
cgcgcaaaagaaatctatgaaaactaccggttcttcgactcaaaggtgctgctgtatccg
gcaagggacctgatgttttacagcgcggacatccgcagccatcagatcggacagcagcgc
atggcggttctgcaggcgcttctggaggaggagcaggtgaccgtcattaccaccctgccg
gggtgcatggagcatgtgctgccgctttcctgcatccgcgaccatgtgctggaatttgcg
caggacagtgagctgaatccggaaaagctttcggggcagctcatcgagatgggctatgaa
aaaacagtgcaggtggacgcgccggggcagtttgccgtccgcggcggaattgttgatatc
tttccgctgacggaggaaaatccggtccgcatcgagctgtggggcgatgagattgattct
atccgcagctttgacgccgaaagccagcgttccattgaaaatctggagacggtgcgcatt
tatccggcgggtgaggcggtcatcagcgacgtccaggcggcaaaagcggcggagcgcata
aaaaaagagagcaaaaagcaggagaaaatcttccgtgacgccatgaaaacggaggaagcg
caccgtgtaagagagacggcgcaggaggtctgcgagcgtctgctggagctgaaggagcgc
accgggctggaagcgtttactccttatttatatgaagagacggtatcttttctggactat
ttcggcacggacgccctgattatgctggatgaaccgaaccgcattgccgaggaagggcgc
gcggtgcaggaggaattttcagagaatatgaaaagccgcctggaaaagggctatattctg
ccgggacagaccgggattctgtacgggcagcagcagattatcggagagctgaaccgcaga
aactgcctggcgctctgcattatggatctgccgcgcgatgagtggaacgtcaccggcagg
tacagcatgaccgtgcgctccatcagctcctacaacagcagctttgagcagcttgtaaag
gatctgaaacgctggaaaaaggaaggctaccgggtagcgctgctctgcgcgtcgcgcacg
cgcgccatgcgtctggcggaggatttgcgggaacacgaactgaacagcttctttacggag
gatatggaccgggagattcagccgggggagattctgcttgcgcggggcaatacgcacaag
ggctatgaatacccgcttatccgctttgcggtgatcacggagagcgatatttttggaaaa
gagaagaagcggcgcaaaaagcagcggcgctatgagggtaccagaatcgccagcttcgca
gagctgaatgtcggcgattacgtggtgcatgaaagtcatggtctgggtatttaccgcggc
atcgagaagatagaagtggaccatgtcatgaaggactacatgaagattgagtacagcggc
ggcagcaatctttatgtgcttgcgacacagtcggacgtcatccagaaatatgccggctct
gaggcaaaaacgccgaagctgaacaggctgggaacgcaggagtggaacaagacgcgcacc
cgtgtgcgcgcggcggtgcagaatattgcaaaagacctggtggcgctctattcccagcgt
cagaaccagaagggctttgcctacggaccggatacggtctggcagcgcgaatttgaggaa
atgttcgaatttgaggagacggacgaccagcttgccgcgattgaagcaaccaagcgcgac
atggagagcacaaaaatcatggaccgtctcatctgcggggacgtgggcttcggaaagacg
gaaattgccatccgcgccgcgttcaaggcagtgcaggaaggcaagcaggtggtgtacctg
gtgccgaccaccatccttgcgcagcagcattacaatacctttgtgcagcgtatgaaggac
ttcccggtgcgggtggatttgctgtgccgattccgcacgcccgcggagcagaaaaaaacg
ctggttgatttaaaaaagggacttgtggacatcctgatcggtacgcaccgcgtgctttca
aaggatgtggaatataaggacctggggctgcttgtgattgacgaggagcagcgcttcggc
gtcacgcataaagaaaaaatcaagcagctaaagacgaacgtggatgtgctcacgcttacc
gcgacgccgattccgcgcacgctgcatatgagcctgatcggtatccgcgatatgagcgtg
ctggaggagccgccgatggagcggaccgccatccagacctatgtgatggaatataatgaa
gaaatggtgcgcgaggcaatcagccgcgagctggcgcggggcgggcaggtttactatgtc
tacaaccgtgtcaacaccatcgtggaaatgacaaacaagatcgcaaagctgctgccggag
gcgaacgtggcgttcgcgcatgggcagatgaaggagcgcgagctggagcgcatcatgtac
gattttattaacggagatattgatgtgctggtgtccaccaccattatcgagaccggtctg
gacatttccaacgtcaataccatgattattcacgacgccgacacgatggggctttcccag
ctctatcagctacgcgggcgcgtggggcgttccaaccggacggcatatgcctttctgatg
taccgcagaaacaagatgctcaaagaggtggcggaaaagcgtctgcacgctatccgggaa
tttaccgagctgggcagcggcatcaaaatcgccatgcgcgacctggaaatccgcggggcg
ggcaacctgctcggcgcagagcagcacgggcacatggaggcggtcggctatgatctttac
tgcaagatgctcaatgaatccgtccgcgagctgaagggagaggcggacccgaccgatacc
tttgagacgacgattgaccttgacattgacgcttatattccggaaaaatatatccgcaac
gaatatcagaagctggatatctacaagcggattgcggctatcgaaaaccaggaggaatac
gacgatatgctggaggagctgatggaccgcttcggggagccgcccagagccgtgcagaac
cttctggcaatcgcgcatctgaaggcggtcgcgcacagagcctacgtgacggagctgacg
cagaagggcgattttatcaagtttgttatgtacgaaaagacgccggcggatccgcggaag
atagagagctgtattgcaaagcatcatggcaggatgaaatttgtgatggagagcagcccc
tattttttgtataccagagggcgcgtcaccaaaaagaacagcaccgacgtgcttgcgctt
acacgggagcttctggaggatatcggaggatgcctggcagagaaatacgcgtctgaatga
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integrated database retrieval system
