Marvinbryantia formatexigens: NQ534_15500
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Entry
NQ534_15500 CDS
T08439
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfor
Marvinbryantia formatexigens
Pathway
mfor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ534_15500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfor03021
]
NQ534_15500 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfor03400
]
NQ534_15500 (rpoC)
Enzymes [BR:
mfor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ534_15500 (rpoC)
Transcription machinery [BR:
mfor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ534_15500 (rpoC)
DNA repair and recombination proteins [BR:
mfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ534_15500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UWO23835
LinkDB
All DBs
Position
3332520..3336272
Genome browser
AA seq
1250 aa
AA seq
DB search
MPETTNNEGYQPMTFDAIKIGLASPDKIREWSHGEVKKPETINYRTLKPEKDGLFCERIF
GPSKDWECHCGKYKKIRYKGVVCDRCGVEVTKSSVRRERMGHIELAAPVSHIWYFKGIPS
RMGLVLDLSPRTLEKVLYFANYIVLDAGNTNLMKKQVLTEKEYQEAREAYGDGFRVGMGA
EAIKELLEEIDVEKEAVELQAALKDSTGQKRARIIKRLEVIEAFRESGNRPEWMILTVIP
VIPPDIRPMVQLDGGRFATSDLNDQYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQESV
DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPQEMAIELFKPFVMKELVANGTSHNIKNAKKMVERLEPQVWDVLEKVIKEHPVML
NRAPTLHRLGIQAFEPILVQGKAIKLHPLVCTAFNADFDGDQMAVHVPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGKFFKSVNEAILAYENGVIT
LQSKIKVRVTKNVNGEEKTGVIESTLGRFIFNEILPQDLGFVDRSIPENELKLEVDFHVG
KKGLKQILEKIINTHGATKTAEALDDIKSMGYKYSTKAAMTVSISDMTVPPEKPELIAKA
QDTVDKITRNYKRGLITEEERYKEVVETWKTTDDILTKALLDGLDKYNNIYMMADSGARG
SDKQIKQLAGMRGLMADTTGHTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRTAD
SGYLTRRLVDVSQELIIREVDCCEGKDEIPGMYVSAFMDGKEEIEGLQDRITGRVSCETI
RDKNGEVIVEANHMITPKRAARIMKDAVTPEGKPYEQVKIRTILTCKSHIGICAKCYGAN
MATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPK
GLAIITEIAGKVEIRDTKKKREIIVTNEETGEAKTYLIPYGSRIKVQDGVVLEAGDVLTE
GSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHIEVIVRQMLKKIRVEECGDT
ELLPGTTVDILDFEEANAKALEEGLRPAEGKEVMLGITKAALATNSFLSAASFQETTKVL
TEAAIKGKIDPLVGLKENVIIGKLIPAGTGMKRYRNVHLSTEYQQDEEEIDLTEEEDDDE
LLDLEDDALDDLEELDGLDESEEPEDEEPEEEEPEEEPEAEEDGEEEPEE
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaacaacaaacaatgaagggtatcagccgatgacgttcgatgcaattaaaatc
ggactggcatctcctgataaaatcagagaatggtcccacggcgaggtaaaaaagccggaa
accatcaactacagaactttaaagccggagaaagacgggctgttctgtgagcgcattttc
ggtccgagcaaggactgggagtgccactgcggaaaatataagaaaatccgctacaaaggc
gtagtctgcgaccgctgcggtgtggaagtcaccaaatccagcgtccgcagagagcgcatg
ggacacatcgagctggcggctccggtatcccatatctggtacttcaagggcatcccgtcc
cgcatgggactggtgctcgacctctctccgcgcacgctggagaaggtgctgtactttgcc
aactacatcgttctggatgcgggtaacaccaatctgatgaagaagcaggtgctgaccgag
aaggaataccaggaggcaagagaggcttacggagacggattccgcgtcggcatgggcgcg
gaggctatcaaggagcttctggaagaaatcgatgtggagaaagaggcggtggagctgcag
gcggctctgaaggattctaccggtcagaagcgcgcccgcatcatcaagcgtctggaggtt
atcgaggcattccgcgaatccggcaaccgtccggaatggatgattctgacagtcattccg
gtcatcccgcccgatatccgtccgatggtacagctggacggcggacgttttgcaacgtct
gacctgaacgaccagtaccgccgcatcatcaaccgcaacaaccgtctgaaaagactgctg
gagcttggtgctccggatatcattgtaagaaacgaaaagagaatgctgcaggaatctgtg
gacgccctcattgataatggacgccgtggacgccctgttaccggaccgggcaaccgcccg
ctgaaatctctttccgatatgctgaagggtaaatccggacgtttccgtcagaacctgctc
ggaaaacgtgtcgattattctggacgttccgttatcgtagtcggaccggagctgaagatt
taccagtgtggtctgccgcaggaaatggcaatcgagctgttcaagccgttcgttatgaag
gagctggtggcaaacggcacgtcgcataacattaaaaatgcaaagaagatggtagaacgt
ctggagccgcaggtgtgggatgtcctggaaaaggtcatcaaggagcatccggttatgtta
aaccgtgcacccacactgcacagacttggtatccaggcatttgagccgattctggtacag
ggtaaggcaatcaagctgcatccgcttgtctgcacggcattcaatgccgacttcgacggc
gaccagatggctgtccatgtgccgctttccgtggaagcacaggcggagtgcagattcctc
ctgctctccccgaacaacctgctgaagccgtccgacggcggcccggtggcggttccttcc
caggatatggtcctcggtatctactacctcacgcaggagagaccgggcgcgaagggcgag
ggcaagttcttcaagagcgtaaatgaggcgattcttgcgtatgagaacggcgtcatcacg
ctgcagagcaagattaaggtccgcgtgacaaagaatgtgaacggcgaggaaaagaccggc
gtgattgaatccacgctgggaagattcatcttcaatgagatccttccgcaggacctgggc
tttgtagaccggagcattccggagaatgagctgaagctggaggtggatttccacgtcggc
aagaagggtctgaaacagattctggaaaagatcatcaatacccacggggcgacgaagacg
gcggaagcgctggatgatatcaagtcgatgggttacaaatactcgacgaaagcagccatg
acggtatctatctccgatatgacggtgccgccggaaaaaccggagctgatcgcgaaagcg
caggatacggtggataagattacgcgcaactacaagcgtggtctgatcacggaggaggag
cgttataaggaggtcgtggagacctggaagacgaccgatgatatccttacaaaagcgctg
ctggatggtctggataaatataataacatttacatgatggcggattccggtgcgcgtggt
tccgataagcagattaaacagcttgccggtatgcgtggtctgatggcggatacgaccgga
cacaccatcgagcttccgattaagtcgaacttccgtgaaggtctggacgtactggaatac
ttcatgtcggcgcacggcgcgcggaaaggtctgtccgatacggcgctgcgtaccgcggac
tccggttatctgacgagacgtcttgtcgacgtttcccaggagctgattatccgcgaggtg
gactgctgcgagggcaaggacgagattccgggcatgtatgtgagcgcattcatggacggc
aaggaagaaatcgagggcctgcaggatcgtatcaccggacgtgtctcctgcgagacgatc
cgcgataagaacggcgaagttatcgtagaggcaaaccatatgattacgccgaagagagcg
gcgcgcatcatgaaggatgctgttacgccggagggcaagccgtatgagcaggtgaaaatc
cgtaccatccttacctgtaaatcccatatcggtatctgtgcgaagtgctatggcgcgaac
atggcgaccggtgaagcggtgcaggtgggtgaagctgtcggaatcatcgcggcgcagtcc
atcggtgagccgggtacacagcttacgatgcgtaccttccataccggcggtgttgccggc
ggcgatatcacacagggtcttccgcgtgtcgaggagctttttgaggcgagaaagccgaag
ggtcttgcgattatcacggaaatcgccggaaaggtggaaatccgcgataccaagaagaag
cgtgaaatcattgtgacgaacgaggagaccggtgaggcgaagacttacctgattccgtac
ggttcccgtatcaaagtgcaggacggcgttgttctggaggcaggcgacgtgctgacagaa
ggaagcgtcaacccgcacgatatcctgaagattaagggcgtgcgcgccgtgcaggattac
atgctgcgtgaggtacagcgtgtataccgcctgcagggtgtggaaatcaacgataagcat
atcgaagtcattgtgcgccagatgctgaagaagatccgcgtggaggagtgcggcgatacc
gaacttcttccaggtacaacggttgatatccttgatttcgaggaggcaaacgcaaaggcg
cttgaggaaggtctgagaccggcggagggcaaagaggtaatgctcggtatcacaaaagct
gctctggcaaccaattccttcctgtccgcagcatccttccaggagaccaccaaggtgctc
acggaggcggctatcaagggtaagatcgatccgcttgtaggtctgaaggagaatgttatc
atcggtaagctgattccggcaggtaccggtatgaagcgctaccgcaatgtacatctcagc
acggagtaccagcaggatgaggaggaaatcgacctgaccgaagaggaggacgatgatgag
cttctcgatttagaggacgatgcattggacgatctggaggagcttgacggtctcgatgaa
tccgaagagccggaggatgaggaaccggaggaagaagagccggaggaagaaccggaagct
gaggaagacggcgaagaagagccggaagaataa
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integrated database retrieval system
