Alexandromys fortis (reed vole): 126490684
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Entry
126490684 CDS
T08493
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126490684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfot03019
]
126490684
Enzymes [BR:
mfot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126490684
Messenger RNA biogenesis [BR:
mfot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126490684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
BCOR
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
126490684
NCBI-ProteinID:
XP_049981741
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHTDSKHITKSFNFYVFPKPFSRASPDVKFVCQSSSIDFLASQG
FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGTMAKCPVTVPEDQKKFIDQVVEK
IEDFLQNEEKKILDLEPCTGFQRKLIYQTLSWKFPKGIHVETLETEKKERHILISKVDEE
ERKRREQEKYAKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPAD
LNQFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP
SYNTASEQLHEAGYDAYITGLCFISMANYLGSLLGPSKVCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPREWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ
PEQVQIAVNTSKYAESYRIQTYAEYVGKKREDKQVKRKWTEDSWKEVDRKQPVVPGPCSH
TNSFAATGVIGKRNLSPDPQEAGSEDRELEEITDSELEQMDSCADPLPEGRKKAKKLKRL
RKGTVADSPAMLFEVPDTW
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccggagtaattttaagattaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttttcaggaatcagcgatggaccttctgtt
actgcattaacaagtggttttgataccccagaagagcgatatcagaagcttaaaaagcat
tctatggactttttgctgtttcagtttggcctttgcgcttttaagtatgaccacacagat
tccaagcatataacgaagtcgtttaacttctatgttttccccaagcctttcagtagggcc
tcgccggacgtcaagtttgtttgtcagagttccagcatcgacttcctagcaagccaagga
tttgactttaataaagtgttttgcagtggaattccatatctgaatcaagaagaagaaaga
cagctgagagagcaatttgatgaaaaacgttctcaggccaatggggcaggaactatggca
aaatgtcctgtgacagttcctgaggaccagaagaagttcattgaccaagtagtagagaag
atagaggattttctacaaaatgaagagaagaagatcttggatctagagccgtgcactggg
ttccaaagaaaactcatttatcagactttgagttggaagtttcccaaaggcattcatgtt
gagacattagaaactgaaaagaaggagagacacatacttatcagcaaagtggatgaggaa
gagcgcaagaggagagagcaggagaagtacgcaaaggagcaggaggaactgaatgatgct
gtgggattttcaagagtcatccatgccattgctaattcgggaaaactggttgttggacac
aatatgctcttggatgtcatgcacacaattcaccagttctactgccctctgcctgcggac
ctgaaccagtttaaggagatgacaacatgtgtcttccccagactcttggatactaaactg
atggccagcacacagccttttaaggatatcattaacaacacatcccttgcagagctggaa
aagcgcttaaaagagacaccctttgaccctcctaaagttgaaagcgcagaaggctttccg
agctacaacactgcttctgagcagctccatgaggcagggtatgatgcttacatcacagga
ctctgcttcatctccatggcaaattacctaggttctttacttgggccttcaaaagtgtgt
gtgtctgccagatcaaaactcattgaacccttttttaacaagttatttctcatgagggtc
atggacattccctatttaaacttggaagggccagacttgcagccgaaacgcgaccatgtc
ctgcacgtgacgttccccagagagtggaagacaagcgacctttaccagctcttcagcgcc
ttcggtaacattcagatatcctggattgatgacacatcagccttcgtttctctcagccag
cctgaacaagtacaaattgctgttaataccagcaaatacgctgaaagttaccggatccag
acctatgctgagtatgtggggaagaagcgggaagacaagcaggtcaagaggaagtggaca
gaagacagttggaaggaggtggacaggaagcagcccgttgtgccaggcccctgttcccac
accaacagcttcgcagcaaccggcgtgattggaaagagaaatctgagtcctgacccacag
gaagctggctcggaggacagagaattggaggaaataactgactctgaacttgaacagatg
gattcctgtgcagaccccctcccagaggggaggaaaaaggccaagaagctaaagagatta
aggaaaggaactgttgcagatagccctgccatgctcttcgaagtccctgacacgtggtaa
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