Alexandromys fortis (reed vole): 126491603
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Entry
126491603 CDS
T08493
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126491603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfot03019
]
126491603
03041 Spliceosome [BR:
mfot03041
]
126491603
Messenger RNA biogenesis [BR:
mfot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126491603
Spliceosome [BR:
mfot03041
]
Complex B
Other components
Prp19-related factors
126491603
Complex C
126491603
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
RPN7
TPR_16
Motif
Other DBs
NCBI-GeneID:
126491603
NCBI-ProteinID:
XP_049983330
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLNRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYA
QFEESMIAAKMETSSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgggttccgcgtcccgagcggccggatcttgtttttgaggaggag
gaccttccctatgaggaagaaatcatgaggaatcagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggggcccccaaaccccggctcaatcagttgtacgagcgggca
ctcaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggca
caggtgaagcatcgctgcgtgactgatcctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccgcgtctgtggctagactactgccagttcctc
atggaccagggacgagtaacacacacccgccgcacctttgatcgtgccctccgggcccta
cccatcacgcagcactctcgcatctggcccctgtacctccgcttcctacgctcccaccca
ctgcctgagaccgctgtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgct
gaggaatacattgagtacctgaaatccagtgaccggctggatgaggcagcacaacgcctg
gccaccgtggtgaatgacgagcgctttgtgtccaaggcgggcaagtccaactaccagctg
tggcatgagctctgcgaccttatctcccagaacccggacaaggtacagtccctcaatgta
gatgccataatccgtggtggactcaaccgcttcaccgaccagctgggcaagctgtggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgggacgtgtacgag
gaggctgtccgcactgtgatgactgtgcgggacttcacccaggtgttcgacagctacgcc
cagttcgaggagagcatgattgcagccaagatggagacttcctctgaactggggcgtgag
gaggaggatgacgtggacctggagttgcgcctggcccgcttcgagcagctcattagccgg
cggcccctactcctcaacagtgtcctgctgcgccagaacccacaccatgtccatgagtgg
cacaagcgcgtggccctgcatcagggccgcccccgtgagattatcaacacatacacagag
gctgtgcagacagtggaccctttcaaggccacaggcaagccccacacgctgtgggttgca
tttgccaagttttatgaagataatggacaactggatgatgcccgtgtcatcctagagaag
gccaccaaggtaaacttcaagcaagtggatgacttggcaagcgtgtggtgccagtgtggg
gagctggagctccgacatgagaattatgatgaggccttgaagctgctgcggaaagctaca
gcattgcctgcccgcagggctgaatactttgatggttcagagccagtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacttggaggaaagtctgggcaccttc
cagtcaaccaaagccgtgtatgaccgaatcttggacctgcgcatagccacaccgcagatc
gtcatcaactatgccatgttcctggaggagcacaagtactttgaggagagctttaaggca
tacgagcgtggcatatcactgttcaaatggcccaacgtgtcagacatctggagcacctac
ctgaccaaattcattgctcgctatgggggccgcaagctggaacgcgcacgggacctcttc
gagcaggcactagatggctgcccgcccaaatatgccaagacgctatacctgctgtatgca
cagctggaggaggagtggggccttgcccgtcatgccatggccgtgtatgatcgcgctacc
agggcagtggagccagcccagcagtatgatatgttcaacatctacatcaagcgggctgct
gagatctatggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgcagacatggagtgcaagcttggtgaa
attgaccgcgcccgggccatctacagtttctgctcccagatctgtgatcccaggacaact
ggggcattctggcaaacatggaaggactttgaggttcggcatggcaatgaggacaccatc
agggagatgctgaggatacgtcggagtgtgcaggccacatacaatactcaggtcaacttc
atggcctcacagatgctcaaggtgtccggcagtgccacaggcacagtgtctgacctggct
cctgggcagagcggcatggatgacatgaagttgctagaacagcgggcagagcagctagca
gctgaggcagagcgggaccagcctcctagggcccagagcaagatcttctttgtaaggagt
gatgcatccagggaggagctggcagagctggctcagcaggccaatcccgaggagatccag
ctgggcgaggaagaggacgaggatgagatggacctggagcccaatgaagtccgactggaa
cagcagagcgtgccagctgctgtatttgggagcctgaaggaagactga
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