Alexandromys fortis (reed vole): 126492205
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Entry
126492205 CDS
T08493
Name
(RefSeq) harmonin-binding protein USHBP1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
mfot
Alexandromys fortis (reed vole)
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mfot03037
]
126492205
Cilium and associated proteins [BR:
mfot03037
]
Primary cilia and associated proteins
USH complex and associated proteins
126492205
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF1664
ATG14
PRKG1_interact
Motif
Other DBs
NCBI-GeneID:
126492205
NCBI-ProteinID:
XP_049984377
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MSARATRPRSRRGRHHPPGELDPVAESSEEAEATSGRFEAKLGLLPEHLSPDLQRPGSRC
LHRPEDDYSVGSHGALALKPEEGCMAEVESPQSPQAATPDTGPAETSVASVFQTLQSRLS
SLEATVAAWRHHSLSFARPAEGEDSGQGAPGSFGEEEAGSGQQEAARLIERNAWLRLALG
SREEELVCAQASLQDARAEKETLQRQVQELEDSLMQLGASLPTPLLRAGCTNSSNSSSSG
AEGQPWAPQDSPLTHPLLQRLRSDSSTHIFGCLSTQPSAPEMHLMEDQMGQLQGSIEKLK
CFNRLLLAVLQGHKGRCESLSMQLGQREAEATALRLALQYSEDCEEAYGVLLTLRTAGAG
AGATKSDLQAAETEASRLLVEKEAAMDGEIPWPSPEGSSVDKPTPQELAAQLHGYIQHLR
ERWALVKIPPALSPDTTPWPTMPHAEATVQAILEIQPGPALPRLEKSQIQQDLVATRDSL
ADLVLRLQLSRREKRGLELRESALRAQGPAHLLLLQQLRWERTYLAGDGSRGGSSEDPSS
EEEDDEEDGQQHYQGPPALPDGQMGRAWDSETLSQELSASLARLYHPCRTAGLRAQLQSL
RQQLEQVAQKGRTRRAQSAELNRELCKAHSSLVLAFRGAHQKQEEQLRKLEQQIARMQAQ
QAEELTVLAATARALEKPGTPQPGQTFL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcccgggccacacggccccgaagtcgccgagggaggcatcatccacccggggag
ctggatccagtggctgagagttcagaggaggcagaggccaccagtgggagattcgaggcc
aaactcggactgcttccggaacaccttagtcctgacctgcagagacccgggagccgttgt
cttcacaggcctgaggatgattattctgtgggatcccatggggccctagccttgaagcca
gaagaagggtgcatggctgaggtggaaagccctcagagcccgcaggcagccaccccggat
actggccctgctgagacgtcagtagccagcgtgttccagaccctgcagagcaggctgagc
tccctagaggccaccgtggccgcctggcgccaccactccctaagctttgcaaggccagcg
gaaggagaagacagtggccagggggcacctgggtcctttggtgaggaagaagctggatct
ggacagcaggaggcagctcgcctcatagagaggaacgcctggctcaggctggccctgggc
agccgggaggaggagttggtttgcgctcaagcttccctgcaggatgcccgggcagagaag
gagaccctgcagagacaggtgcaggagctggaggattctctgatgcagctgggggcttcc
ctgcccaccccccttctcagagcagggtgtacaaacagcagcaactccagcagttctggg
gcagaagggcagccctgggcacctcaggattcccccttgactcaccctcttctccaacgc
ctccggagtgactccagcacccacatctttgggtgcctttccacacagccttcagccccc
gagatgcacctcatggaggaccagatggggcagctccaaggaagcattgagaagttgaag
tgcttcaaccgccttctgctggctgtgctccagggtcacaagggccgctgtgagagcctt
agtatgcagctgggtcagcgggaggctgaggccacagccctgcgcctggccctgcaatac
agcgaggattgtgaggaggcgtatggagtgctgctcactctgaggactgctggagctgga
gctggagccaccaagagtgacctgcaggctgcggagacagaggcatctaggctgctggtg
gagaaggaagccgctatggatggagagataccctggccaagccctgagggcagcagtgtg
gacaagcctacaccacaggaactggctgctcagctccatggctatatccagcatctccgg
gaacgctgggctctggtgaagatccccccggcgctcagtcctgacaccacaccctggccc
actatgccccacgcagaagcaacagtgcaggccattctggaaatacagcctggcccagcc
ctgccccggctagagaagtctcagatccagcaggacctggtggctactcgggacagtctg
gcggacttggtgctgcggctgcagctgtcccggcgagagaagcgcgggctggagctgcgg
gagtcggcgctgagggcccagggccccgcccacctgctgctactgcagcagcttcgctgg
gagcggacttacctggctggagatggcagcagaggaggcagcagcgaggacccgagcagc
gaagaggaggacgacgaggaggatggacagcaacactaccagggccctcctgccctcccc
gatggccagatgggcagagcatgggattctgagaccttatcccaggaactgtcagcatcc
cttgcccgtctctatcacccttgcaggacagcgggccttcgggcacagctgcaatccctg
cggcagcagctggaacaggtggctcagaagggccgaaccagacgtgctcagagtgcagag
ctgaaccgggagctgtgcaaggctcacagctccctggtcttggccttcagaggagcccac
cagaagcaggaagagcagctccggaagttggagcagcagattgctaggatgcaggcccag
caggcagaggagctgacagtgctggcagccaccgccagagccctggagaagcccgggact
ccacagccaggccagactttcctgtag
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