Alexandromys fortis (reed vole): 126492844
Help
Entry
126492844 CDS
T08493
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot04151
PI3K-Akt signaling pathway
mfot04510
Focal adhesion
mfot04512
ECM-receptor interaction
mfot04518
Integrin signaling
mfot04974
Protein digestion and absorption
mfot05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126492844
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126492844
04518 Integrin signaling
126492844
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126492844
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126492844
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
126492844
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mfot00536
]
126492844
Glycosaminoglycan binding proteins [BR:
mfot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126492844
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
126492844
NCBI-ProteinID:
XP_049985415
LinkDB
All DBs
Position
Unknown
AA seq
1486 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLRCQGQDAEDAGSCFQNGQMYKDKDVWKPTPCRICVCDTG
TILCDDIHCEEKDCLDAEVPFGECCPICPADLTPASGQLGPKGQKGEPGDIKDIVGPKGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLIGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP
RGPPGPAGKPGDDGEAGKPGKAGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGKDGQPGPAGPPGPVGP
AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP
KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGL
PGTPGTDGPKGAPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGA
DGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDTGSPGRAGDPGLQGPAGPSGEKGEPGD
DGPPGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP
VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGP
TGKQGDRGESGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQGL
PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP
PGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAGSSLRQHDVEVDATLKS
LNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGE
TCVYPNPATVPKKNWWSSKGKEKKHVWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLL
STEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTAMKDGCTKH
TGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctcgtactgctgacgctgctcatcgccgcggtc
ctacggtgtcaaggccaggacgctgaggatgctggcagctgctttcagaatgggcaaatg
tataaagataaggatgtatggaagcccacaccctgccgcatctgtgtgtgcgacactggg
acaatcctctgcgacgacattcactgtgaagaaaaggactgcctcgacgccgaggtcccc
ttcggagagtgctgtcccatctgcccagctgacctcacccctgccagtggacaactaggg
ccaaagggccagaaaggagaacctggagacatcaaggatatcgtaggacccaaaggacca
ccaggccctcagggacctgctggtgaacaaggacccagaggtgatcgtggtgacaaggga
gaaaagggtgcacctggacctcgtggccgagatggagagcctggtacccctggaaatcca
ggtccccctggccctccaggcccccctggtccccctggccttattggaaacttcgccgcc
cagatggctggaggctttgatgagaaggctggaggtgcccagatgggagtgatgcaaggt
ccgatgggccccatgggacctcgaggacccccaggccctgccggtgcccctggccctcaa
ggatttcaaggcaatcctggtgaacctggcgagcccggtgtctctggtcccatgggtccc
cgtggtcctccaggccctgctggaaaacctggcgatgatggtgaagctgggaaacctgga
aaagctggggaaagaggccttcctggccctcagggtgctcgcggattccctggaacccca
ggccttcctggtgtcaaaggtcacagaggttacccagggctcgatggtgctaagggagaa
gctggtgctccaggtgtgaagggcgagagtggttctcccggtgagaatggttcccctggc
ccaatgggtccccgaggcctgcctggtgagagaggacggactggtcctgctggtgctgct
ggtgctcggggcaaagatggccagccaggtcctgctgggcctccgggtcctgtcggtcct
gcaggtggtcctggcttccctggagctcctggtgctaagggagaagctggccccactggt
gctcgtggtcctgaaggtgctcaaggtcctcgtggcgaacctggcaaccctgggtcccct
gggccagcaggtgcttctggtaacccaggaacggatggcatccccggagccaaaggatct
gctggtgctcctggaattgctggtgcccctggtttcccagggccccgtggtcctcctggt
ccccaaggtgcaactggtcctctgggccccaaaggtcagatgggtgagcctggcattgct
ggcttcaaaggtgaacaaggccccaagggagaaactggtcctgctgggccccagggagcc
cctggtcctgctggtgaggaaggtaaaagaggcgctcgaggagaaccaggcggtgctggg
cccatcggtccccctggagaaagaggtgcccctggcaaccgtggtttccccggtcaagat
ggtctggcaggtcccaagggtgctcctggagaacgagggcctagtggcctggctggtccc
aagggagccaatggtgaccctggtcgtcctggagaacctggccttcctggagcccggggt
cttacgggtcgtcctggtgatgctggtcctcaaggcaaagtcggtccttctggagcccct
ggtgaagacggtcgtcctggacctcctggtcctcagggagctcgtgggcagcctggtgtc
atgggtttccctggccccaaaggtgccaatggcgagcctggcaaagctggtgagaaggga
ttggctggtgctcctggtctgagaggtctgccaggcaaagatggtgagacaggtgccgcg
ggaccccctggccctgccggacctgctggtgaacgaggcgagcagggtgctcctgggcca
tcagggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaaacaaggt
gaccagggtattcctggtgaagctggagctcctggccttgtgggtcccaggggtgaacga
ggtttcccaggtgaacgtggatctcctggtgcacaaggcctccagggtgctcgtggtctc
cctggtactcctggtactgatggtcccaaaggtgcacctggcccagatggcccccctggg
gctcagggtcctcccggtctacaaggaatgcctggtgagaggggagcagctggtattgct
ggacccaagggagacagaggcgacgttggtgagaaaggcccagagggggctcctggaaag
gacggtggacgaggtctgactgggcccatcgggcccccaggcccggcaggtgccaatggc
gagaagggagaagttggacctcctggcccttcaggaagtactggtgctcgcggcgctccg
ggtgaacgtggagaaactgggccacctggacctgctggattcgctgggccacctggtgct
gatggccagcctggtgccaagggtgaccaaggagaggccggacagaaaggagatgctggt
gcccccggcccccaaggcccctctggagctcctgggccacagggtcctactggagtgact
ggtccgaagggagcccgaggcgcacaaggccccccaggagccaccggattcccaggagct
gctggccgtgttggaccaccaggctctaatggcaaccctggacccccaggtccccctggt
ccttctggaaaagatggccccaaaggtgctcgaggagacacaggttcccctggccgagct
ggtgaccctggacttcaaggccctgcaggaccttctggcgagaaaggagaacctggagat
gacggtccccctggttctgacggtcctccaggtccccaggggctggctggtcaaaggggc
attgttggtcttcctggacagcgtggtgagagaggattccctggccttcccggcccatcg
ggtgagcctggcaagcagggtgcacctggtgcatctggagacagaggtcctcctggcccc
gtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagccctggt
gctgatggaccccctggcagagatggtgcagctggagtcaagggtgatcgcggagagact
ggtgcactgggcgctcctggagctcctgggcccccaggttctcctggccctgctggccca
actggcaaacaaggagacagaggagagtctggtgcacaaggtcctatgggcccctcagga
cctgctggagcccgtggaatcccaggccctcaaggcccccgaggtgacaaaggagaatct
ggagagcctggcgagaggggactgaagggacaccgaggcttcactggacttcagggtctg
cctggccctccgggtccctctggagatcaaggtgcttctggcccagctggtccctctggc
cctagaggtccacctggccccgttggtccttccggcaaagatggctctaatggaatccct
ggccccattgggcctcctggtccccgtggacgttcaggcgaaacgggccctgctggtcct
cctggaaatcctggtccccctggccctccaggtcctcctggtcccggcatcgacatgtca
gcctttgctggcttaggccagagagagaagggccctgaccccctgcagtacatgcgagcc
gacgaggcaggcagctccctgagacagcacgatgtggaggtggatgccaccctcaagtca
ctcaataaccagattgagagcatccgcagccctgacggctcccgcaagaatccagctcga
acctgccaggacctgaaactgtgccatccagagtggaagagcggagactactggattgac
cccaaccagggctgcaccttggacgctatgaaagtgttctgcaacatggagacaggcgag
acttgcgtctaccccaacccagcgacggtgcctaagaagaactggtggagcagcaagggc
aaggagaagaagcatgtctggtttggagaaaccatgaacggcggcttccatttcagctac
ggtgatggcaacctggctcccaacaccgctaacgtccagatgaccttccttcgtctactg
tccaccgagggctctcagaacatcacttaccactgtaagaacagcatcgcctacctggat
gaagctgccggcaacctcaagaaggccctgctcatccagggctccaatgatgtggagatg
agggctgagggcaacagcaggttcacgtacacggccatgaaggacggctgcacgaaacac
accggtaagtggggcaagactgtcatcgaataccggtcacagaagacgtcacgccttccc
attgttgacattgcacccatggacataggaggccctgagcaggagtttggtgtggacata
gggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
