Alexandromys fortis (reed vole): 126494875
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Entry
126494875 CDS
T08493
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03013
Nucleocytoplasmic transport
mfot03015
mRNA surveillance pathway
mfot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126494875
09122 Translation
03013 Nucleocytoplasmic transport
126494875
03015 mRNA surveillance pathway
126494875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfot03019
]
126494875
03041 Spliceosome [BR:
mfot03041
]
126494875
Enzymes [BR:
mfot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126494875
Messenger RNA biogenesis [BR:
mfot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126494875
Spliceosome [BR:
mfot03041
]
Complex C
Other components
EJC/TREX
126494875
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126494875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
126494875
NCBI-ProteinID:
XP_049988302
LinkDB
All DBs
Position
Unknown
AA seq
316 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVSIEGFCGHEH
WAAPAVAKACVGGACV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgtcgacaacgagctcttagactacgaagatgatgaagtggagaca
gcggctgggggagatgggaccgaagcgcctgccaagaaagacgtcaagggctcctacgtc
tccatccacagctctggcttccgagacttcctgctcaagccagagctgctccgggccatt
gtagactgtggctttgagcatccatcagaagtccagcatgaatgcatccctcaggccatt
ctggggatggatgtcctgtgccaggccaagtcgggcatggggaagacagcagtgtttgtc
ctggccacactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcctttcagatcagcaaggagtacgagcgcttctcaaagtacatg
ccgaacgtcaaggtggcagtgttttttggcggtctgtctatcaaaaaggatgaagaggtg
ctgaagaagaactgcccacacatcgtcgtggggactcccggccggattctagccctggct
cgaaataagagcctgaacctcaagcacattaaacactttatcttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatctttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaatgagaagaaccggaagctttttgac
cttctcgatgtcctcgagttcaaccaggtcagtattgagggtttctgtgggcatgagcac
tgggcagctccagctgtggcaaaagcctgtgtaggaggagcctgtgtttga
DBGET
integrated database retrieval system
