KEGG   Alexandromys fortis (reed vole): 126496229
Entry
126496229         CDS       T08493                                 
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mfot  Alexandromys fortis (reed vole)
Pathway
mfot03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mfot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    126496229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mfot03021]
    126496229
   03036 Chromosome and associated proteins [BR:mfot03036]
    126496229
Transcription machinery [BR:mfot03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     126496229
   Coactivators
    SAGA/TFTC/STAGA complex
     126496229
Chromosome and associated proteins [BR:mfot03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     126496229
    STAGA complex
     126496229
    TFTC complex
     126496229
    SAGA complex
     126496229
    SLIK complex
     126496229
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_DCAF4 Beta-prop_SPT8 RMC1_N Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_Vps41 PEP5_VPS11_N Beta-prop_WDR19_1st WD40_like Beta-prop_IP5PC_F PROPPIN WD_LRWD1 Ge1_WD40 WDR54 Nbas_N
Other DBs
NCBI-GeneID: 126496229
NCBI-ProteinID: XP_049989730
LinkDB
Position
Unknown
AA seq 348 aa
LQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSKK
LKSEPHLVDTSRIRLACDTLEEEENEEDNTGTEMKILRGHCGPVYSTRFLADNSGLLSCS
EDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRI
YAGHLAEVDCVKFHPNSNYLATGXTDKTVRLWSAQQGNSVRLFTGHRGPVLALSFSPNGK
YLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLVASASMDNSVRVWDIRS
TSCNTPADGSSGELVGVYTGEMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1047 nt   +upstreamnt  +downstreamnt
ttgcaggaaagtatcaagcgagtcaaggatggacctccttccctcaccaccatctgcttc
tatgccttctataacacagagcagctgctgaatactgcagagatctcctctgatagcaaa
cttctggctgctggatttgacaattcctgcataaagctctggagcttgcggtccaaaaag
ctgaaatcagagccccaccttgtggacacatctcgtatccgtctagcctgtgacactttg
gaggaggaggagaatgaggaagacaatacaggcacagagatgaagatcctgcgtggacac
tgtggcccagtatatagcacacggttcctcgcagacaactcggggctgctctcttgttct
gaagatatgtccatcaggtactgggacctggggagcttcaccaacactgtgctctatcag
ggacatgcctacccggtgtgggacgtggacatcagcccctacagcctgtattttgccagt
gggtcccatgaccgtaccgccaggctctggtcctttgatcggacgtacccgctgaggata
tatgcaggacacctggctgaagtggactgtgtcaaattccaccccaactcaaactacttg
gctacaggtnccactgacaaaactgtccggctgtggagtgcccaacagggcaactcagtg
cggctcttcacagggcaccgaggtcccgtgctcgccctttccttctctcccaacggtaag
tacttggcgtccgctggtgaggaccagcggttaaagctgtgggacttggcctctgggaca
ctttttaaagaactgagaggccacacagacagtatcaccagcctggcctttagcccagac
agtggtctggttgcctctgcctccatggacaactctgtgcgtgtctgggacatcagaagc
acatcctgcaacacacctgctgatggctcttcgggtgagcttgtgggcgtgtacacggga
gagatgagcaacgtcctgagtgtacagttcatggcctgcaacctcctcctggtgactgga
atcacacaagagaatcaagaacattaa

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