Alexandromys fortis (reed vole): 126497719
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Entry
126497719 CDS
T08493
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot04120
Ubiquitin mediated proteolysis
mfot04137
Mitophagy - animal
mfot04141
Protein processing in endoplasmic reticulum
mfot05012
Parkinson disease
mfot05014
Amyotrophic lateral sclerosis
mfot05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126497719
04120 Ubiquitin mediated proteolysis
126497719
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
126497719
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
126497719
05014 Amyotrophic lateral sclerosis
126497719
05022 Pathways of neurodegeneration - multiple diseases
126497719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mfot04131
]
126497719
04121 Ubiquitin system [BR:
mfot04121
]
126497719
03029 Mitochondrial biogenesis [BR:
mfot03029
]
126497719
Enzymes [BR:
mfot01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
126497719
Membrane trafficking [BR:
mfot04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
126497719
Aggrephagy
Other aggrephagy associated proteins
126497719
Xenophagy
Other xenophagy associated proteins
126497719
Ubiquitin system [BR:
mfot04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
126497719
Mitochondrial biogenesis [BR:
mfot03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
126497719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Rcat_RNF216
Crinkler
Motif
Other DBs
NCBI-GeneID:
126497719
NCBI-ProteinID:
XP_049991859
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVQSCD
LEQQSIVHIVQRPWRKSRETNASGEDKPHNISGGSAWEPRSLTRVDLSSHILPANSLGLA
IILDTSSSSDSEAARGPAGKPTYNSFYVYCKGPCHKVQPGKLRVQCGTCRQATLTLAQGP
SCWEDVLIPNQMSGECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLITTNSRNITCIA
CTDVRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEQGQRKVTCEGGNGLGC
GFVFCRDCKEAYHEGKCDSLFEASGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPR
CNVPVEKNGGCMHMKCPQPQCRLEWCWNCSCEWNRACMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgttcgtcaggttcaactccagccatggcttcccagtggaggtggattctgac
accagcatcttccagctcaaggaagtggttgctaagcgacagggggttccggctgaccag
ctgcgtgtgatttttgctgggaaggagcttcggaatgacctgacagtgcagagctgtgac
ctggaacagcagagcatagttcacatagtgcagagaccgtggagaaaaagtcgtgagaca
aacgcttctggagaggacaagccccacaacatctcagggggctctgcctgggagcccaga
agcttgacgagggtggacctcagcagccacatcctgccggcgaactccctggggctggcg
atcattctggacacaagcagcagcagcgattccgaagcggccagaggtccagcaggtaaa
cctacctacaacagcttctatgtctactgcaagggcccctgccacaaggtccagcctgga
aagctccgagttcagtgcggcacctgcagacaagccaccctgaccttggcccagggtccg
tcctgctgggaagatgtcttaattccaaaccagatgagtggcgagtgccagtctccagac
tgtcctggaaccagagcagaatttttctttaaatgcggagcacacccaacctctgacaag
gatacatctgtagccttgaacctgatcaccactaacagccgcaacatcacctgcatagcg
tgcacagatgtcaggagccccgtcctggtcttccagtgtaaccaccgccacgtgatctgc
ttggactgcttccacttgtactgtgtcaccagactcaacgaccggcagtttgtccatgat
gctcagcttggctactccctgccgtgtgtggctggctgtcccaactccctgattaaagag
ctccatcacttccggattcttggagaagagcagtacaacaggtaccagcagtatggcgca
gaggagtgtgtactgcagatggggggcgtgctgtgcccccgtcctggctgcggagctggg
ctgctgcctgaacagggccagaggaaagtcacctgtgaagggggcaacggcctgggctgc
gggttcgtcttctgcagggactgtaaggaagcttaccacgaaggtaaatgtgactcgctg
tttgaagcctcgggggccacctctcaggcctaccgagtggacaaaagggctgctgagcaa
gctcgctgggaggaggcctccaaagaaaccatcaagaaaaccactaagccttgtcctcgc
tgcaatgtgccagtggaaaaaaatggaggctgcatgcacatgaagtgtccgcagccacag
tgcaggctggaatggtgctggaactgcagctgtgagtggaaccgagcctgcatgggtgat
cactggttcgacgtgtag
DBGET
integrated database retrieval system
