Alexandromys fortis (reed vole): 126499847
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Entry
126499847 CDS
T08493
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03082
ATP-dependent chromatin remodeling
mfot04714
Thermogenesis
mfot05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126499847
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
126499847
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
126499847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfot03021
]
126499847
03036 Chromosome and associated proteins [BR:
mfot03036
]
126499847
Transcription machinery [BR:
mfot03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
126499847
Chromosome and associated proteins [BR:
mfot03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
126499847
PBAF complex
126499847
GBAF(ncBAF) complex
126499847
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
126499847
NCBI-ProteinID:
XP_049995199
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MAAAAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKALAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPCPSSQEDEDWLRPVMRKDKQVLVHWGFYPDSYD
TWVHCNDVDAEIEDPPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKED
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDSDGQQLEKAENKVENESDEGDKIQDGENEKSSEKEQDSEVSEDIKPEEKENDETKEL
TDPCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
HGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPGS
MMPGQPMPGRMIPTVAANIHPTGSGPAPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQP
PPPSADGVPPPPAPGPPTSATP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcagcgggcggtggtccgggagcggcagcaggcgccgtgggtgcagggggt
gcggcggcggcctcgggcctggccgtgtaccggcggaaggacgggggccctgccagcaag
ttttgggagagcccggatacggtgtcccagctggattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgcagatgctcctaccaataaagcgctggctggactggtg
gtacagcttcttcagttccaagaagatgcctttgggaagcatgtcaccaacccggctttc
accaaactacctgcaaaatgttttatggatttcaaagctggaggcaccttgtgtcacatt
cttggggctgcttacaagtacaaaaatgaacaggggtggcgcagatttgatcttcagaat
ccatcccgaatggatcgtaatgttgaaatgttcatgaacattgaaaaaacgttggtacaa
aacaattgtctgactagacccaacatctacctcattccggacattgatttgaagttggct
aataaattgaaagatatcatcaaacggcaccaggggacatttactgatgaaaagtcaaaa
gcttcccaccatatttatccatgtccttcctcacaagaggatgaagattggttgagacca
gtgatgagaaaagacaagcaggtgttagtacactggggcttttacccagacagctatgac
acttgggtccactgtaatgatgttgatgctgaaattgaagatccaccaattccagaaaag
ccatggaaggttcatgtaaaatggattttggacactgacgttttcaatgagtggatgaat
gaagaggactatgaagtggacgagaacaggaagccagtgagttttcgtcagcgaatttca
acaaagaatgaagagccagtcagaagtccagagaggagggatcgaaaagcatcagctaat
gcccgaaagagaaaacattccccctcccctcctcctcccacacccacagaatcccggaag
aagagtgggaaaaaaggacaagctagcctttatgggaagcgtagaagtcagaaagaagat
gatgaacaagaagatcttaccaaggacatggaagacccaacacctgtaccaaatatagaa
gaagtggtgctccctaagaacgtaaacccaaagaaagacagtgaaaacacacctgttaaa
ggaggcacagtggcggatctagatgagcaggatgaagaagcagttacaacaggaggaaag
gaagatgaggatcctagcaaaggtgatcctagtcggtctgttgacccaggtgaagataac
gtgacagaacagaccaatcacatcattattcccagctatgcatcctggtttgattataac
tgtattcatgtgattgaacggcgtgctcttcctgagttttttaatgggaaaaacaaatcc
aagactccagaaatatatttggcatatcgaaattttatgattgacacataccgtctaaac
ccccaagaatatttaaccagtactgcttgtcggagaaacctgaccggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgatcct
gaaagtcgacccatggcaatgggccctccgcctactcctcatttcaatgtgttggctgac
acgccttcagggcttgttcctttgcatcttcggtcacctcaggtccctgctgctcaacag
atgttaaactttcccgagaagaacaaggaaaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagcaaaggtgctagtgccggaagg
gagtggaccgagcaggagactctccttctcctggaggccctggagatgtacaaggatgat
tggaataaagtctcagaacatgttggaagtcgtactcaggatgaatgcatcctccatttt
ttgaggcttcccattgaggacccataccttgaaaattcagatgcttcccttgggccgcta
gcttaccagcctgtccctttcagccagtcagggaacccagtgatgagtactgttgctttt
ttagcatctgtagttgacccccgtgtggcctctgctgcagcaaaagcagctttggaggag
ttttctcgggtccgagaagaagtaccactggaattagttgaagcacatgtcaaaaaggta
caagaggccgcaagagcctctgggaaggtggaccccacctatggcttggaaagcagctgt
attgcaggcacaggtcctgatgagccagagaagcttgaagggtctgaagaagaaaagatg
gaaacagattccgatggtcagcagcttgaaaaggctgaaaacaaagtggaaaatgaatcg
gatgaaggtgataaaatccaggatggagaaaatgaaaaaagcagtgagaaggaacaagat
agtgaagttagtgaggatatcaaaccagaagaaaaggagaatgacgagaccaaggaactc
actgatccgtgtaaagaaagagaaagcgatactgggaagaagaaagtggaacacgagatt
tctgagggaaatgtggccacagccgcagcagctgctctcgcctcagctgctaccaaagcc
aagcacctggctgctgttgaagagagaaaaatcaagtccctggtggctctcctggtagag
acacagatgaagaaactagagatcaaacttcgacattttgaagagctggagactattatg
gacagagagaaagaggctctagaacagcagagacagcagttgcttactgagcgccagaac
ttccacatggaacagttgaaatacgctgagctccgggctcgccaacagatggaacagcag
catggccagaaccctcagcaagcacaccagcactcaggagggcctggtctggccccgctc
ggagcagcagggcaccctggcatgatgcctcatcagcagcccccaccctaccctctgatg
caccatcagatgccgccaccacaccctccccagccaggtcagataccaggccctggctcc
atgatgcctgggcagcccatgccaggccgcatgattcctactgtggcagccaacatccat
cctaccgggagtggccccgcccctcccggcatgcctccaatgcccggaaacatcttagga
cccagggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcagcagccg
ccgcctccatctgcagacggggtccctccacctcctgctccaggcccaccaacctcagcc
actccttag
DBGET
integrated database retrieval system
