Alexandromys fortis (reed vole): 126501253
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Entry
126501253 CDS
T08493
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126501253
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mfot04147
]
126501253
00535 Proteoglycans [BR:
mfot00535
]
126501253
00536 Glycosaminoglycan binding proteins [BR:
mfot00536
]
126501253
Exosome [BR:
mfot04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126501253
Proteoglycans [BR:
mfot00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
126501253
Glycosaminoglycan binding proteins [BR:
mfot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126501253
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Laminin_G_2
DUF7693
Motif
Other DBs
NCBI-GeneID:
126501253
NCBI-ProteinID:
XP_049997771
LinkDB
All DBs
Position
Unknown
AA seq
1518 aa
AA seq
DB search
MAPDPSRRLWLLLLLLYCCPEPARPDNNPLNPLNPLRPLAWLWPTKTDHPVSKSQISSPV
QSTGSPTTHVVPQDGLTDQQTTPADPRLPLEDREAGQNGTPTAPALPIPPTASAAASPDM
KEENVAGVGAKILNVAQGIRSFVQLWDEDTATENSAGTETSASTIPTVLLTSTEFSSAPQ
EGEITLWQSGGVPSSPDVQTTEAGTLAVPTQPPPSLNSLQAPLRRPPGPPAPPENIAEEV
GLPQLLGDPLPPQIQQIEDPDVGPAYIFGLDSSGGQVAQHHFPRLFFRDFSILFHIQPAT
KAAGVLFAITDAAQTVVSLGVKLSGVQDGYQNISLLYTEQGASQTRTGASFHLPAFVGQW
THFALSVDGRSVALYIDCEEFQKVPFARSPQGLELEHDSGLFVGQAGVADPDKFQGKISE
LKIRQNPRVSPVHCLDEDDDDEDRASGDFGSGFEESSKPHREEDISLAPRLPQPPPVTSP
PLAGGSTTEDSRTEETEEETTVESIGAQTLPGTSGTREESVQNHGSGLIKGGLKGQKGEP
GVPGLPGPAGPQGPAGPVVQNPSAQPVPGAQGPPGPQGPPGKDGAPGRDGEPGDPGEDGR
PGDTGPQGFPGTPGEVGPKGEKGDPGVGVRGPPGPPGPPGPSFRQDKLTFIDMEGSGFSG
DMESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYAPGPAGLPGVPGKEGPPGFPGPPG
PPGPPGKEGPPGVAGQKGSVGEVGIPGPKGSKGDLGPVGVPGKTGMAGPPGPTGPPGPPG
PPGPPGPGFAAGFDDMESSGMPFWPTARSSDGLQGPPGLPGLKGDPGVAGPPGTKGEVGA
DGIQGIPGLPGREGAAGPPGPKGEKGTQGEKGNPGKDGVGLPGLPGPPGPPGPVVYVSNE
DRAVVSTPGPEGKPGXAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGAIFGPDGRALGP
AQKGAKGEPGFRGPPGPXGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASLGFSLRGL
PGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGDKGEVGPPGPPGQFP
IDFFHLGAEMKGDKGDRGDTGQKGERGEPGAAGGGFFSSSVPGPPGPPGYPGIPGPKGES
IRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPG
AMGASAGVRIWATYQTMLDKVREVPEGWLIFVAEREELYVRVRNGFRKVLLEARTALPHG
TGNEVAALPPLVQLHEGSPYTRREHSYSTARPWRADDILVNPPRLPDPQPYPGVPHHHSA
YVHQPPARPTSSPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTF
RAFLSSRLQDLYSIVRRADRGTVPIVNLKDEVLSASWDTLFSGSQGQLQPGARIFSFDGR
DVLRHPAWPQKSIWHGSDPSGRRLMENYCETWRTEASEATGQASSLLSGRLLEQRAASCH
NAYIVLCIENSFMTPFSK
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagacgcctctggctgctgctgttgctgctctactgctgccct
gagcctgccaggcctgacaacaatcccctgaatcccttgaatcccctcaggcctctggct
tggctgtggcccaccaagaccgaccatccggtctccaagtcccagatcagttcacctgtg
cagtccacagggagccccaccacgcacgtggtcccccaggatggccttacagatcagcag
acgactcctgccgaccccaggctacccctggaggatcgggaagctggccagaatgggacc
cctacagctcctgccctccccattcccccgacggcctctgccgccgcgagcccagacatg
aaggaggagaatgttgccggcgttggagccaagattctgaatgtggcccagggcatccgg
agcttcgttcagctgtgggatgaggacacggctaccgagaactctgctgggacagaaacc
tcggcttccacgatccctacggtcctcctcacttctaccgagttttccagcgccccccag
gagggtgagatcactctctggcaaagtggaggtgttccaagttctccagatgttcagaca
actgaggccggcaccctggctgtgcccacccagccacctccctccctgaatagcctccag
gcaccactgagaagacccccagggccaccagcacccccagagaacatcgctgaggaggtg
gggctgccacagctcctcggggaccctctgcccccgcagatccaacagatcgaagacccc
gacgtcgggccagcctacatctttggactagactccagtggtggccaggtggcccagcac
cacttccctagactcttcttccgtgacttttcaatcctgtttcatattcagccggccaca
aaggccgcaggggtgctgtttgccatcacagacgctgcgcagacagtggtctcgctgggc
gtgaagctctcgggggtgcaagatggctaccagaacatctcactgctctacacggaacaa
ggtgccagccagacccgcacgggcgccagcttccacctgcctgcgtttgttggccagtgg
acacacttcgcgctcagtgtggatggccgctctgtggctctctacatagactgcgaagag
ttccagaaggtgccgtttgctcggtccccgcaaggcctggaactggagcatgactctggc
ctcttcgtgggtcaggctggagtagctgaccctgacaagttccaggggaagatctcagag
ctgaagatacgacagaacccccgggtgagccctgtgcactgcttggatgaagatgatgat
gatgaagacagggcatctggagactttggaagtggctttgaagaaagcagcaagccacac
agggaggaggatatatctctagcacccaggctcccccagccaccccctgtcacttccccg
cccctggctggaggcagcaccacggaagattctagaacagaagaaacagaggaagaaacc
acggtagagtctataggagctcagacccttcctggcacaagcggtacacgggaagagagc
gtccagaatcatggaagtggcttgataaagggaggtctgaagggacaaaagggggagcca
ggtgttccgggcttacctggcccagctggtccccagggtcctgcaggcccagtggtacag
aaccccagtgcacaacctgtccctggagcacaaggacccccagggcctcaggggccacca
ggaaaagatggagctccaggaagggatggtgaaccgggtgaccctggtgaagatggaagg
ccgggtgacactgggcctcaaggctttccaggaaccccaggagaagtgggccccaagggt
gagaagggagatcctggtgttggagttcgaggacctccaggacctccagggccaccagga
ccctcctttagacaggacaagttgaccttcattgacatggaaggatctggtttcagtggt
gatatggagagcctcaggggcccacgaggcttccctggtcccccgggaccccctggtgtc
ccaggactgcctggtgaaccagggcgctttggagtcaacagctcctatgctccaggacct
gcaggccttcctggtgtgcctgggaaggaagggccccccggatttcctggccccccggga
cctccaggtcctccaggcaaagagggcccaccaggagtggccggccagaaaggcagtgtt
ggcgaggtgggcatcccaggacccaaggggagcaaaggagatcttgggcctgtcggtgtg
cctggaaagactggcatggctggaccccctgggccaactggaccaccaggacctccaggc
cccccggggccaccagggccaggatttgctgctggattcgatgatatggaaagctctggg
atgcccttctggccaacagcccgaagctccgacgggctgcagggacctccagggttgcca
ggactcaagggggatcctggagtggcagggccacctggaaccaagggagaagttggagca
gatggaatccagggcatccctggcctcccaggaagagagggtgcagctgggcccccggga
ccaaaaggagagaaagggacccagggagaaaagggaaacccaggaaaagacggagtgggg
cttccaggcctccctggccccccaggacctccagggcctgtggtctatgtgtcaaatgag
gatagagcagtggtgagcacgccaggacctgagggcaagccagggtaagcaggctttcct
ggacctgccgggccgaagggtgacctgggttccaaaggcgagcagggtcttccagggccc
aagggtgagaaaggcgagccaggtgctatctttggccctgatggcagagccctgggccct
gcccagaaaggagccaagggagaaccaggcttccgaggacccccgggtccttaagggcga
cctgggcacaagggtgaaatcggcttccctggacggccgggtcgtcccggaacaaatgga
ttaaagggagagaaaggggagcctggagatgccagccttgggttcagcttgaggggattg
cctggcccccctgggcctccaggccccccaggtcctccgggaatgcccatctatgacagc
aatgcatttgtggagtctggccgacctggtctaccaggacagcaaggtgtgcaggggcct
tcaggaccaaagggtgataaaggagaggtgggcccacctgggcctccagggcagttcccc
atcgacttcttccacctgggagcggaaatgaagggtgacaagggagaccgaggggacact
ggacagaaaggagagcggggagaacctggggctgctggtggtggattcttcagttcaagt
gtgcctggaccacctggcccgcctggctaccctgggattccgggtccaaagggagagagc
attcggggcccacctggccctcctggccctcagggacctcctggtattggctatgagggg
cgtcagggacccccaggaccgccaggaccgccaggacctccctcgttccctggtcctcat
aggcagactgtcagtgttcctggtcctccaggccctcctggccctccgggtcccccagga
gccatgggtgcctccgctggggtgaggatctgggccacataccagaccatgctggacaag
gtacgcgaggtgccggagggttggctcatcttcgtggctgagagggaagagctctacgta
cgtgttagaaatggcttccggaaggtgctgctggaggcccggacagctctcccacatggg
acgggcaatgaggtagcagctctgcccccactggtgcagcttcacgagggcagcccgtat
acccggcgggagcactcctattccacagctcggccctggcgtgcagatgacatcctagtc
aacccaccacgtctgccggatccacagccttaccctggagttccacaccaccacagtgcc
tacgtgcaccagccgccagcccgccccacaagctcacctgctcacacgcaccaggacttc
cagccagtgctccacctggtagcactcaacagcccgctgtcaggtggcatgcgtggcatc
cgaggggccgacttccagtgcttccagcaggcccgagccgtggggctggctggcaccttc
cgtgccttcttgtcctctaggctgcaggacctctacagtattgtgcgccgtgctgaccgg
gggactgtgcctatcgtcaacctgaaggatgaggtgctatctgccagctgggacaccctg
ttttctggctcccaggggcaactgcagcctggggcccgcatcttttctttcgatggcaga
gatgtcctgagacacccagcctggcctcagaagagtatatggcacggctcagaccccagc
gggcgcaggctgatggagaattactgtgagacatggcggactgaggccagtgaggccaca
ggtcaggcctcctccctgctgtcaggcaggctgctggaacagagagctgcgagctgccac
aacgcctacatcgtcctgtgcatcgagaatagtttcatgacccccttctccaagtag
DBGET
integrated database retrieval system
