Alexandromys fortis (reed vole): 126507229
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Entry
126507229 CDS
T08493
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
126507229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mfot03036
]
126507229
Chromosome and associated proteins [BR:
mfot03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126507229
microRNA pathway
RISC loading complex
126507229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
ResIII
DEAD
Cas3-like_C_2
Amidoligase_2
Motif
Other DBs
NCBI-GeneID:
126507229
NCBI-ProteinID:
XP_050007451
LinkDB
All DBs
Position
Unknown
AA seq
1915 aa
AA seq
DB search
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
ILDHPYREIMKLCESCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNVSVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCE
EHFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDD
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDGAEAD
VDAVVDDDDVFPPYVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPD
GTFYSTLYLPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQ
QMLELITRLHQYIFSHILRLEKPALEFKPTGAESAYCVLPLNVVNGSSTLDIDFTFMEDI
EKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
GVRSLPADFRYPNLDFGWKKSIDSKSFISTCNSSLAENDNYCKHSTIIVPENAAHQGATR
TSLENHDQMSVNCRRLPAESPGKLQIEVSTDLTAINGLTYNKNLANGSYDLVNRDFCQGN
QLNYFKQEIPVQPTTSYSIQNLYNYENQPKPSNECTLSNKYLDGNANTSTSDGSPAVSTM
PAMMNAVNAFKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDS
FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWL
PPGYVVNQDKSNADKWEKDEMTKDCLLANGKLGEDCEEEDLTWRAPKEEAEYEDDFLEYD
QEHIQFIDSMLMGSGAFVKKISLSPFTTSDSAYEWKMPKKSSLGSMPFSSDLEDFDYSSW
DAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEAL
LGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALYPAQENFSSQQKSLSGSCAAAAA
SPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYRFKNKAYLLQAF
THASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFAS
LAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKA
MGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKF
SPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcagcccctcagcatggcaggcctgcagctcatgacccctgct
tcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataac
atttatactccaagaaaataccaggttgagctgctggaagcggctctggaccataacacc
attgtctgcttgaataccggctcagggaagacgttcatcgcggtcctgctcaccaaagag
ctggcccatcagatcaggggcgacctcaacccacatgcaaaaaggaccgtgttcctcgtc
aactctgcaaaccaggttgctcaacaagtctcagctgtcagaacccactcagatctcaag
gttggggagtattcaaacctagaagtcaatgcatcttggacaaaagagagatggagccaa
gagtttactaagcaccaggttctcattatgacttgctatgtcgccttgaatgttttgaag
aatggttacttgtcactgtcagacattaaccttctggtgtttgatgagtgccatcttgca
attctagaccacccctatcgagaaattatgaagctctgtgaaagttgtccatcatgccct
cgaattttgggactaacagcttcaattttaaatggaaaatgtgatccagaggaattagaa
gaaaagattcagaaactggagaagattcttaagagtaatgccgagactgcgactgacctt
gtggtcttagacagatacacttctcagccgtgtgagattgtggtagattgtggaccattt
actgacagaagtgggctttatgaaagactgctgatggaattagaagaagcacttaatttt
atcaatgattgtaatgtatctgtacattcaaaggaaagagattctactctgatttccaaa
cagatactctcagattgccgtgcagtgttggttgttctgggaccctggtgtgcggacaaa
gtagccggcatgatggtaagagaactgcagaagtacatcaaacacgagcaagaggagctg
cacaggaagttcttactgtttacagacactttgctgaggaaaatacatgcactgtgtgaa
gagcacttctcacctgcctcacttgacctgaagtatgtgactcctaaagtaatgaaactg
cttgagatcctgcgcaaatacaagccctatgagcgacagcagtttgaaagtgttgagtgg
tacaataataggaatcaggataattatgtgtcctggagtgattctgaggatgatgatgat
gatgaagaaattgaagaaaaggaaaagccagagacaaatttcccttctccatttaccaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgtcctgaacagattg
ataaaggaagctggcaaacaagatccagagctggcttatatcagtagcaactttataact
ggacatggcattgggaagaaccagcctcgcagcaaacagatggaagcagagttcagaaag
caagaggaggtacttcggaaatttcgagctcacgagactaacctgctcattgcaacaagt
gtcgtagaagagggtgtggatattcccaaatgcaacttggtggttcgttttgatttgccc
acggagtatcgatcatatgttcagtctaaaggacgagcacgagccccgatctctaactat
gtgatgttagcagatacagacaagataaagagcttcgaagaagaccttaagacctacaaa
gctatagaaaagatcttaagaaacaagtgttcaaagtcagtggatggtgctgaggctgac
gttgatgccgttgtagatgatgatgatgtgttcccaccatatgtattgaggcctgatgac
gggggtccacgagtcacgattaacactgccattggacacgtcaacagatattgtgctcga
ttaccaagtgatccgtttacacatctagctcccaaatgtagaacccgagagttacctgat
ggtacattttattcaactctttatcttccgattaactcacctctccgagcctccattgtt
ggtccaccaatgggctgtgtacggttggctgaaagagtggtagctctcatttgctgtgaa
aaactgcacaagattggtgaactggatgaacatttgatgcctgttgggaaagagactgtt
aaatatgaagaagagcttgacttacatgatgaagaggagaccagtgttccaggaagacca
ggatccacaaagcgaaggcagtgctaccctaaagcaattccagagtgcttgagggagagt
taccccaaacctgatcagccttgttacctgtatgtgatagggatggtcttaactaccccc
ctccctgatgaactcaacttcaggcgacggaagctctaccccccagaggacaccacaaga
tgctttggaatcctgaccgccaaacccatacctcagattcctcactttcctgtgtataca
cgctctggagaagtcaccatatccattgagctgaagaagtctggtttcacattgtctcaa
caaatgcttgagctgattacaagactccaccagtatatattctcacatattcttcgcctg
gaaaaacccgccctagagtttaaacctacaggcgctgagtcagcatactgtgttctacct
cttaatgttgttaatggctctagcactctggacattgactttacattcatggaggatatt
gagaagtctgaagctcgtataggcattcccagcaccaagtactcaaaagaaacaccgttt
gtttttaagttagaagattaccaagatgcagttatcattccaagataccgcaattttgat
cagcctcatcgattttacgtagctgatgtgtacactgatcttaccccactcagtaaattt
ccttcccctgaatatgaaacttttgcagaatattataaaacaaagtacaatcttgacctg
accaatctcaaccagccactgctggatgtcgaccacacatcttccagacttaaccttttg
acacctcggcatttgaatcagaaggggaaagcacttcctctaagcagtgctgaaaagagg
aaagccaaatgggaaagtctgcagaacaaacagatactagttccagaactctgtgctata
catccaattccagcatcactgtggagaaaagcggtttgtctccccagcattctttatcgc
cttcactgccttttgactgcagaggagctaagagctcagacagccagcgatgctggtgtg
ggagtaagatcacttcctgcagattttagataccctaacttagacttcgggtggaaaaaa
tctattgatagcaagtctttcatctcaacctgtaactcctcgttggctgaaaatgataat
tactgtaagcacagcacaattatagtccctgaaaatgctgcacatcaaggtgctactaga
acctccttagaaaaccatgaccaaatgtctgtgaactgcagaaggctacctgctgagtca
cctgggaagctccagattgaagtttcaacagatcttacagcaattaatggtcttacttac
aacaaaaatcttgccaatggcagttatgatttagttaacagagacttttgccaaggaaat
cagctgaattacttcaagcaggaaatacctgtacaaccaactacctcatattccattcag
aatttatacaattatgagaaccagcccaagcccagcaatgaatgtactctgagtaataaa
taccttgatggaaacgctaacacatctacctcagatggaagccccgcggtgtccacgatg
cctgccatgatgaatgctgttaatgcattcaaggacaggatggactctgagcagagccct
tctgttgggtactcctcaaggactcttggtcccaatcctggactaattcttcaggctttg
acactgtcaaatgctagtgatgggtttaacctggagcggcttgagatgcttggcgactcc
tttttaaagcatgctatcaccacatatctcttttgcacttaccctgatgctcatgagggc
cgcctttcatatatgagaagcaaaaaggtcagcaactgtaacctgtatcgccttggcaag
aagaaggggctgcccagccgcatggtagtgtcgatatttgatcctcctgtgaattggctt
cctcctggttatgtggtaaatcaagacaaaagtaacgcagataaatgggaaaaggatgaa
atgacaaaagactgtttgctggctaatggcaaactaggtgaggactgtgaggaggaggac
ctgacgtggagggctcccaaggaggaggctgaatatgaagacgacttcctggagtatgat
caggagcacatacagtttatagacagcatgttaatggggtcaggagcctttgtgaagaaa
atttctctttctccttttacaacctctgattctgcttatgaatggaaaatgcccaaaaag
tcctccttaggcagtatgccgttttcctcagaccttgaggattttgactacagctcttgg
gatgcaatgtgctatctggatcctagcaaagctgttgaagaggatgactttgtggtaggt
ttctggaatccatcagaagaaaactgtggcgttgacacagggaagcagtccatttcttac
gacttgcacacggagcagtgcattgctgacaaaagcatagcagattgtgtggaggccctg
ctgggctgttatttaaccagctgtggcgagagggctgctcagcttttcctctgttcactg
ggactgaaggtactcccagtcatcaaaaggaccagccgggaaaaggccctgtaccctgct
caggagaacttcagcagccaacaaaagagcctttcagggagctgtgctgccgctgcagcc
agcccacgctcctctgcagggaaagacttggagtacggctgcctgaagatcccaccaagg
tgtatgtttgaccatccagatgcagagaaaaccctgaaccacctgatttctgggtttgaa
aattttgagaagaaaatcaactacagattcaagaataaggcttaccttctgcaggctttt
acacatgcctcctaccactacaacactatcactgattgttaccagcgcttagaattcctg
ggagatgcgattttggactacctcataaccaagcacctttatgaagacccacggcagcat
tccccaggggtcctgactgacctgcgctctgccctggtcaacaacaccatctttgcttca
ttggctgtgaagtatgactaccacaagtactttaaagctgtctctcccgagctcttccat
gtcattgacgactttgtgcagtttcaacttgagaagaacgagatgcaagggatggactct
gagcttaggagatccgaggaggatgaggagaaagaagaagatatcgaagtccccaaggcc
atgggggacatttttgagtctctcgctggtgccatttatatggacagtgggatgtctctg
gaggttgtctggcaggtgtactacccaatgatgcggccgctaatagaaaaattttctgca
aacgtgccccgttctccagtgagagaattgcttgagatggaaccagaaactgccaagttt
agcccagcagagagaacttacgatgggaaggtcagagtcaccgtggaagtggtgggaaag
gggaaatttaaaggtgtcggccggagttataggatcgcaaagtctgctgcagcaagaaga
gccctccgcagcctcaaagctaaccagcctcaggttcctaacagctga
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integrated database retrieval system
