Alexandromys fortis (reed vole): 126509962
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Entry
126509962 CDS
T08493
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mfot
Alexandromys fortis (reed vole)
Pathway
mfot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126509962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfot03019
]
126509962
03036 Chromosome and associated proteins [BR:
mfot03036
]
126509962
Enzymes [BR:
mfot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126509962
Messenger RNA biogenesis [BR:
mfot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126509962
mRNA degradation factors
5'-3' decay
Decapping complex
126509962
Chromosome and associated proteins [BR:
mfot03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126509962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
YnaM
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
126509962
NCBI-ProteinID:
XP_050012158
LinkDB
All DBs
Position
Unknown
AA seq
320 aa
AA seq
DB search
MRDTEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQ
VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH
VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMVSIKSILSITY
LLCLFSLCWHTMIKCLPDEMKCYDTDIEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV
NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSN
IDKSLYVAEYHSEPVEDEKP
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgagggacacggaggagagcattcccattgctttatctggtagggatatcttagctaga
gcaaaaaatggaacaggcaaaagcggtgcctacctcattcccttacttgaacggctggac
ctgaagaaggacaatattcaagcaatggtgattgttcccacaagagaacttgctctacag
gtcagtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaacc
acaggaggaacgaatttacgggatgacataatgaggcttgatgatacagtgcatgtggtg
atcgctacccctggcagaatcctggatcttatcaagaaaggagtagcgaaggttgaccat
gtccagatgatagtattggatgaggcagataaattgttgtcgcaggattttgtgcagatt
atggaggatattattctcacactacctaaaaataggcagattttgctatattctgctact
ttccctcttagtgtacaaaagttcatggtaagtattaaatctatactttcaatcacctat
ttactatgcctgttcagcctgtgctggcacacgatgataaagtgcttgcctgatgagatg
aagtgttatgatacagacatagaacatcgaaatcgtgtctttcatgatttccgaaatggc
ttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatacaagctgtg
aatgtggtaataaactttgacttcccaaagctggcagagacctatcttcatcgcattgga
agatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatatgatgatcgc
ttcaacctgaaaagtattgaggagcaactgggcacagaaattaaacctatcccaagcaac
attgacaagagcctgtatgtggcagaataccacagtgagcctgtagaagatgagaagcct
taa
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