Magnetovirga frankeli: D5125_00915
Help
Entry
D5125_00915 CDS
T11075
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfra Magnetovirga frankeli
Pathway
mfra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5125_00915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfra03021
]
D5125_00915 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfra03400
]
D5125_00915 (rpoC)
Enzymes [BR:
mfra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5125_00915 (rpoC)
Transcription machinery [BR:
mfra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5125_00915 (rpoC)
DNA repair and recombination proteins [BR:
mfra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5125_00915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
ApbA_C
gerPA
Motif
Other DBs
NCBI-ProteinID:
QFY88154
LinkDB
All DBs
Position
complement(2782659..2786879)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKILKQQGQADEFEGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVNDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLACPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVVDPGMTTLERGQLLTDDQYLEALEENGDEFVAKM
GAEAVYELLKDLDLPRETERLREEIQGTNSETKIKKFSKRLKLIEALLESDNRPEWMVMT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGIPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVERGEGVVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLVEGKAINLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYFMTREKVNAKGEGMAFSSITEARRAYESG
AAELNARVKVRVREVVVDEEGKRSTGYPVKDTILGRALLFEIVPEGLPFDLVDQAMGKKP
ISRLLNACYRRLGLKDTVVFADQVMYMGFRLATRAGVSICADDMVVPEEKGAILAKAEDE
VKEIESQYAQGLVTNGERYNKVVDIWSHTNDLVAKAMMAKLGKQRLTNSAGETVEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVQEVDCGTEEGLLMTPIIEGGDVVEALRERIL
GRVVASDILLPGSDDEVLCEAGTLLDEAWVERLDEAGVDHVWVRSAITCQSKVGVCSMCY
GRDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVNNIQVKSTGKVR
LHNIKTVVHGSGNLVAVSRSGELTVQDEVGRERERYKLPYGAVLQVADGGEVEAGQIVAN
WDPHTHPVVTEVAGKVSFVDFIEGVTVQSQTDEVTGLSSLVVMDPKQRPSSGKDMRPLVK
LLDADGKDLNIAGTDIPAHYFLPSGAIVSMTDGAEVGVGDVVARIPQESSKTRDITGGLP
RVADLFEARKPKDPAILAERTGTVSFGKDTKGKQRLIITDAEGDTHEELIPKWRNVNVFE
GEQVEKGEVIADGELNPHDILRLKGITDLAEYLVKEIQDVYRLQGVKINDKHIEVILRQM
VRKVEITGSGETRLLRGDQMEKARVIEVNNKARSENKLEAQYEPMLLGITKASLATESFI
SAASFQETTRVLTEAATRGSRDDLVGLKENVIVGRLIPAGTGHAYHTERRRMRQEMVVEE
HSERKVELVAEEIEEALKQELSTTDM
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgctaaaaatcctgaagcagcagggacaggccgacgagttcgaggggatt
cgcatcggtctggcctcgcccgacatgatacgttcctggtcctttggcgaggtcaaaaag
ccagaaacgatcaactaccgcaccttcaagccggagcgggacggcctgttctgcgccaag
atcttcggcccggtgaacgactacgagtgcctgtgcggcaaatacaagcgcctcaagcac
cgtggcgtggtgtgcgaaaagtgcggcgtcgaggtcaccctggccaaggtacgccgtgag
cgcatggggcatatcgacctggcctgtccggtggcgcacatctggttcctcaagtctttg
ccctcgcgcatcggcctgctgctggacatgaccctgcgggatatcgagcgggtgctctat
tttgaatccttcgtggtggtcgatcccggcatgaccaccctggagcgcgggcagttgctc
accgacgatcagtacctggaggcgctggaagagaatggcgatgaattcgtggccaagatg
ggtgccgaggcggtctatgaactgctcaaggacctggacctgccgcgtgagaccgagcgc
ctgcgcgaggagatccagggcaccaactccgagaccaagatcaagaagttcagcaagcgt
ctgaagctgatcgaggccctgctggaatccgacaaccgtcccgagtggatggtgatgacg
gtgctgccggtattgccgccggaactgcgcccgctggtgcccctggatggcggccgcttc
gccacctcggacctgaacgacctctatcgccgggtgatcaaccgcaacaaccgtctgcgc
cgtctgctcgacctgaatgccccggacatcatagtgcgcaacgaaaagcgaatgttgcag
gagtcggtggatgccctgctggataacggtcgtcgtggtcgcgccatcaccggcaccaac
aagcggccgctgaagtccctggccgacatgatcaagggcaagcagggccgcttccgtcag
aacctgctgggcaagcgcgtggattactccggccgctcggtcatagtggtcggccccacc
ctcaagctgcaccagtgcggtatcccgaaaaagatggcgctggagctgttcaagcccttc
atcttctccaagctgcaactgcgcggcctggccaccaccatcaaggcggcgaagaagatg
gtggagcgcggcgagggcgtggtctgggacatcctcgaagaggtcatccgcgaacacccg
atcatgctcaaccgcgcccccaccctgcaccgtctcggcatccaggcgttcgagccggtg
ctggtagagggcaaggcgatcaacctgcatccgctggtctgtaccgcctttaacgccgac
ttcgacggcgaccagatggcggtgcatgtgcccctgtcgctggaggcccagctcgaggcc
cgcgccctgatgatggcctccaacaacatcctctcgccggccaatggcgagccgattata
gtcccctcccaggacgtggtgctcggcctctacttcatgaccagggaaaaggtcaacgcc
aagggcgagggcatggccttctccagcatcaccgaggcccgtcgcgcctatgaatcaggc
gcagccgagctgaatgcacgggtcaaggtgcgggtgcgcgaggtagtggttgacgaggaa
ggcaagcgcagcaccggctatccggtgaaggacaccatcctgggccgcgccctgctgttc
gagatcgtgcccgagggcctgcccttcgatctggtcgatcaggccatgggcaagaagccc
atctcgcgcctgctcaacgcctgttaccgccgcctgggcctgaaggataccgtggtcttc
gccgaccaggtgatgtacatgggcttccgcctggccacccgcgccggcgtctctatctgc
gccgacgacatggtggtgccggaggagaagggtgccatcctggccaaggccgaggacgag
gtgaaggagatcgaatcccaatacgcccagggcctggtgaccaatggcgaacgctacaac
aaggtggtggatatctggtcgcacaccaatgacctggtggccaaggcgatgatggccaag
ctgggcaagcagcgcctgaccaacagcgccggcgagaccgtggaacaggactcgttcaat
tccatttatatgatggccgattccggtgcccgtggctccgccgcccagatccgtcagctg
gccggtatgcggggcctgatggccaagccggacggctccatcatcgagacaccgatcacc
gccaacttccgtgaggggctggacgttctgcaatacttcatctccacccacggcgcgcgc
aagggtctggccgataccgccctgaagaccgccaactccggttacctgacccgccgtctg
gtggacgtggcgcaggatctggtggtgcaggaggtggattgcggcaccgaggaaggcctg
ctgatgacacccatcatcgagggcggcgacgtggtcgaggccctgcgcgagcgcatcctg
ggccgcgtggtggccagtgacatcctcctgccgggcagcgatgacgaggtgctctgcgag
gccggcaccctgctcgacgaggcctgggtggaacgcctggacgaggccggggtggaccat
gtctgggtgcgttcggcgatcacctgtcagtccaaggtgggcgtctgttccatgtgctat
ggccgcgacctggcccgtggccacagggtcaacatcggcgaggcggtgggcgtcatcgcc
gcccagtccatcggcgagcccggcacccagctgaccatgcgtaccttccacatcggcggg
gccgcctcgcgtgccgcggcggtgaacaatatccaggtcaagtccaccggcaaggtacgc
ctgcacaacatcaagacggtggtacacggcagcggcaacctggtggcggtatcccgctcc
ggtgagttgaccgtgcaggatgaggtagggcgtgagcgcgagcgctacaaactgccctac
ggtgccgtgctgcaggtggccgatggtggcgaggtcgaggccggccagatcgtcgccaac
tgggacccccacacccaccctgtggtcaccgaggtggcgggcaaggtctccttcgtcgat
ttcatcgaaggggtgacggtacagagccagaccgacgaggtcaccggcctgtcctccctg
gtggtgatggaccccaagcagcggccctcctcgggcaaggacatgcgtcccctggtcaag
ctgctggatgccgatggcaaggatctgaacatcgccggtaccgatattccggcccactac
ttcctgcccagcggggccatcgtcagcatgaccgacggtgccgaggtgggtgttggcgac
gtggtggcgcgtatcccgcaggagtcctccaagacccgcgatatcaccggcggtctgccg
cgcgtggcggatctgttcgaggcgcgcaagccgaaggatccggccatcctcgccgagcgt
acaggtacggtcagcttcggcaaggacaccaagggcaagcagcggctgatcatcaccgat
gccgagggcgacacccacgaggagctgatccccaagtggcgcaacgtcaacgtgttcgag
ggcgagcaggtggagaagggcgaggttatcgccgatggtgaactcaacccgcacgacatc
ctgcgcctgaagggcatcaccgacctggccgaatacctggtcaaggagatccaggacgtc
tatcgcctgcaaggggtaaagatcaacgacaagcacatcgaggtgatcctgcgccagatg
gtgcgcaaggtggagatcacaggctctggcgagacccgcctgctgcgtggcgatcagatg
gagaaggccagggtgatcgaggtcaacaacaaggcgcgcagcgaaaacaagctggaggcc
cagtacgagcccatgctgttgggtatcaccaaggcctccctggcgaccgagtccttcatc
tcggcggcctctttccaggagaccacacgggtactcaccgaggcggccacccgtggcagc
cgcgacgacctggtggggctgaaggaaaacgtcatcgtcggccgcctgatcccggccggc
accggtcacgcctaccacaccgaacggcgccgtatgcgccaggagatggtggtggaggaa
cacagcgagcgcaaggtcgagctggtggccgaggagatcgaagaggccctcaagcaggaa
ctcagtaccacggatatgtga
DBGET
integrated database retrieval system
