Magnetovirga frankeli: D5125_01345
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Entry
D5125_01345 CDS
T11075
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfra Magnetovirga frankeli
Pathway
mfra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D5125_01345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfra03400
]
D5125_01345 (mfd)
Enzymes [BR:
mfra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D5125_01345 (mfd)
DNA repair and recombination proteins [BR:
mfra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D5125_01345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
Glyco_tran_WecG
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFY88227
UniProt:
A0A5Q0EGR0
LinkDB
All DBs
Position
complement(2875646..2879143)
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AA seq
1165 aa
AA seq
DB search
MPSQPISSQTAKPKTAPLLAPPLPQQAGERLQWGGLPGASAALALAELVQAHPGPVLIAA
ADMQSAAELQLGLEFFLGHDGPEVLAFPDWETLAYDVFSPLPEIISQRLSLLARLPSLER
GALIVPVSTLMQRLCPPSFLHGRVFDLKVGDRLELEQVRRQLTHAGYSSVSQVVAHGEFA
VRGSLFDLFPMGAAQPYRIDLFDDEIDSIRLFDPDSQRSGAKTEQIRLFPAREFPTDPDS
LSAFRQAWRAQINGDPLASPIYQGISEGLLPGGIENYLPLFFDPLVSLFDYLSENRVCVS
FANSRQLAEQFQQDLALRYEQLRHDIQRPLLPPERLYLSPDELVSQLKRRSLVEIDPKAI
EAPRKGFKAAQNLNIRPLPPLGFNARAARPAGLLQDFLANDPGRVLFLAESPGRREQLLA
SLRDFAINPHSYSSWAEFSVDDRPLGICVAPLEQGFRLEQPSLSLITESQLLGQRVRQNR
RKRKSDSDPELVVRNLTELNIGAPVVHEEHGVGRYLGLQTLNVGGQTSEFLTLEYAKGDK
LYVPVSALNLISRYTGVSPDNAPLHRLGSGQWDKARRKAMEKARDVAAELLDIYARREAH
QGHAFTPPGAEYAAFAAAFEFEETPDQQSAIDAVIADMTAPQPMDRVVCGDVGFGKTEVA
MRAAFMAAQGGRQVAILAPTTLLVQQHFDNLSDRFADWPMRIENLSRFRSAKEQKVALAG
LADGTVDIVVGTHKLLNSEIKFKQLGLVIIDEEHRFGVRHKERLKSLRSNVDMLTLTATP
IPRTLNMAMSGLRDLSIIATPPAARHPIKTFVSEWNDGLIREACQRELKRGGQIYFLHNE
VESIARMAERLGELVPGARIAFAHGQMRESELEQIMRDFYHQRFNLLVSTTIIESGIDVP
SANTIIIHRADKLGLAQLHQLRGRVGRSHHRAYAYLLTPPPKTLTEDARKRLEAIESLEE
LGAGFTLATHDLEIRGAGELLGDDQSGQIQEIGFSLYTDLLERAVRALKSGQQPELAMSL
EPATEVDLGLPALLPEDYLPDVHMRLVQYKRIAGAKDEAALKELQVEMIDRFGLLPQPAK
TLFAVTRLRLRAEALGLKKLEASAKGGRILFTPKPQIDPARLIQLIQTRPQEYKLDGPDK
LRFFLDLEDPESRAERFNAVLDGLI
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcccagccagcccatttccagtcagaccgccaagccgaaaaccgcccccctccttgcc
ccgcccctgccgcagcaggcgggtgagcgcctgcaatggggcggtctgcccggcgcctct
gccgccctggcgctggcggagctggtgcaggcccacccgggtccggtgcttatcgccgcg
gcggatatgcagagcgccgccgagttgcagctggggctggagttctttctcggccatgac
gggcctgaggtgctggcctttccggactgggaaaccctggcctacgatgtcttctcgccc
ctgccggagatcatctcccagcgcctgagcctgcttgcgcgcctgccgagcctggagcgc
ggtgccctgatcgtgccggtgagcaccctgatgcagcgcctgtgcccgccgagctttctc
catggccgggtgtttgatctcaaggtcggcgaccgcctggagctggagcaggtgcgccgt
cagctgacccatgccggctacagcagcgtgtcccaggtggtggcccacggcgagtttgcc
gtgcgcggctcgctgtttgatctcttccccatgggcgcggcgcagccctaccgcatcgac
ctgtttgatgacgagatcgacagcatccgcctgttcgacccggacagccagcgctccggc
gccaagaccgagcagattcgcttgttcccggcgcgcgagttccccaccgacccggacagc
ctgtccgccttccgtcaggcctggcgcgcccagatcaacggcgaccccctggccagcccc
atctatcaagggatcagcgagggcctgctgcccggcggcatcgagaactatctgccgctg
ttcttcgatccgctggtcagcctgttcgattatttgagcgagaaccgggtctgcgtcagc
ttcgccaacagccgccagctggcagagcagttccagcaggatctggccctgcgttacgag
cagctgcgccacgacatccagcggccgctgctgccgccggagcggctctatctgagcccg
gatgagctggtcagccagctcaagcgccgcagcctggtggagatcgaccccaaggccatc
gaagcaccgcgcaagggcttcaaggcggcgcagaatctcaacatccgccccctgccgccg
ctgggcttcaacgcccgtgctgcgcgcccggccgggctgctgcaggattttctggctaat
gatccgggccgcgtgctgtttctcgccgaaagtccaggccggcgcgagcaactgctggcc
agcctgcgggatttcgccatcaacccccacagctacagcagctgggccgagttcagcgtc
gatgaccgcccgctgggcatctgcgtggcgccgctggagcaaggcttcaggctggaacag
ccgagcctgagcctgatcaccgaatcccagctgctcggccagcgggtgcggcagaaccgg
cgcaagcgcaagagcgacagcgaccccgagctggtggtgcgcaacctcaccgagctgaac
atcggcgcgccggtggtgcacgaggagcacggcgtcggccgctatctcggcctgcagacc
ctcaacgtcggcggccagaccagcgaatttctcaccctggaatatgccaagggcgacaag
ctctatgtgccggtctcggcgctgaacctgatcagccgctacaccggcgtctcgccggac
aacgcgccgctgcaccgcctcggcagcggccagtgggacaaggcgcggcgcaaggcgatg
gagaaggcccgggatgtggccgctgagcttttggatatttatgcccgccgcgaggcccat
cagggccacgccttcaccccgccgggcgccgagtatgccgcctttgccgccgccttcgag
ttcgaggaaacacccgaccagcaatccgccatcgatgccgtgatcgctgacatgaccgcg
ccccagcccatggaccgggtggtctgcggcgatgtcggcttcggcaagaccgaggtggcg
atgcgcgctgccttcatggccgctcagggcgggcgtcaggtggccatacttgcccccacg
accctgctggtgcagcagcatttcgataacctctccgaccgctttgccgactggccgatg
cgcatcgagaacctgtcgcgctttcgcagcgccaaggagcaaaaggtggcgctggccggt
ctggccgatggcaccgtggacatagtcgtcggcacccataagttgcttaacagcgagatc
aaattcaagcagctggggctggtgatcatcgacgaggaacaccgctttggcgtgcgccac
aaggagcggctgaagtccctgcgcagcaacgtcgatatgctcactctgacggcgacgccg
attccgcgcaccctcaacatggccatgtccggcctgcgcgatctgtccatcatcgccacc
ccaccggcggcacgccacccgatcaagaccttcgtcagcgagtggaacgacggcctgatc
cgcgaggcctgccagcgcgaactcaaacgcggcggccagatctacttcctgcacaacgag
gtcgaaagcatcgcccgcatggccgagcgcctgggcgagctggtgccgggcgcgcgcatc
gccttcgcccatggccagatgcgcgagagcgagctggagcagatcatgcgcgacttctac
caccagcgcttcaacctgctggtgagcaccaccatcatcgaaagcggcatcgacgtaccc
agcgccaacaccatcatcatccaccgcgccgacaagcttggcctggcccagctgcaccag
ctgcgcggccgggttggccgctcccaccaccgcgcctacgcctatctgctcacgccgccg
ccgaagaccctcaccgaggatgcgcgcaagcgtctggaggcgatcgaatccctcgaggaa
ctgggcgccggcttcaccctggccacccacgatctggagattcgcggtgccggcgaactg
ctcggtgacgaccagagcggccagattcaggagatcggtttcagcctctacaccgacctg
ctggagcgggcggtgcgggcactcaagtccggccagcagccggagctggcgatgagtctg
gaaccagccaccgaggtcgatctgggcctgcccgccctgctgccggaggactatctgccg
gatgtgcacatgcgtctggtgcagtacaagcgcattgccggcgccaaggacgaggcggcg
ttgaaggagcttcaggtggaaatgatcgaccgcttcggcctgctgccgcagccggccaag
accctgttcgccgtcacccgcctgcgcctgcgcgccgaggccctgggcctgaagaagctg
gaggccagcgccaagggcgggcgcatcctgttcacgccaaagccgcaaatcgacccggcc
aggctgatccagctgatccagacccggccgcaggaatacaagctcgacggcccggacaag
ctgcgctttttcctcgacctggaagacccggaaagccgcgccgagcggttcaatgccgtg
ctggatgggctgatctga
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